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This page was generated on 2026-04-08 06:45 -0400 (Wed, 08 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4897
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 34/49HostnameOS / ArchINSTALLBUILDCHECK
metaboliteIDmapping 0.99.11  (landing page)
Sebastian Canzler
Snapshot Date: 2026-04-08 05:45 -0400 (Wed, 08 Apr 2026)
git_url: https://git.bioconductor.org/packages/metaboliteIDmapping
git_branch: RELEASE_3_22
git_last_commit: a6a6bf6
git_last_commit_date: 2025-09-16 11:14:40 -0400 (Tue, 16 Sep 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  NO, version to propagate (0.99.11) is lower than published version (1.0.0)


CHECK results for metaboliteIDmapping on nebbiolo2

To the developers/maintainers of the metaboliteIDmapping package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: metaboliteIDmapping
Version: 0.99.11
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:metaboliteIDmapping.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings metaboliteIDmapping_0.99.11.tar.gz
StartedAt: 2026-04-08 05:59:57 -0400 (Wed, 08 Apr 2026)
EndedAt: 2026-04-08 06:08:51 -0400 (Wed, 08 Apr 2026)
EllapsedTime: 533.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: metaboliteIDmapping.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:metaboliteIDmapping.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings metaboliteIDmapping_0.99.11.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-data-annotation/meat/metaboliteIDmapping.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* checking for file ‘metaboliteIDmapping/DESCRIPTION’ ... OK
* this is package ‘metaboliteIDmapping’ version ‘0.99.11’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘metaboliteIDmapping’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... WARNING
Error while performing HEAD request.
   Proceeding without cache information.
loading from cache
Error while performing HEAD request.
   Proceeding without cache information.

It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package.  All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... NOTE
Error while performing HEAD request.
   Proceeding without cache information.
loading from cache
Error while performing HEAD request.
   Proceeding without cache information.

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.22-data-annotation/meat/metaboliteIDmapping.Rcheck/00check.log’
for details.


Installation output

metaboliteIDmapping.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL metaboliteIDmapping
###
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* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘metaboliteIDmapping’ ...
** this is package ‘metaboliteIDmapping’ version ‘0.99.11’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
loading from cache
** testing if installed package can be loaded from final location
loading from cache
** testing if installed package keeps a record of temporary installation path
* DONE (metaboliteIDmapping)

Tests output


Example timings

metaboliteIDmapping.Rcheck/metaboliteIDmapping-Ex.timings

nameusersystemelapsed
metabolitesMapping0.0400.0040.045