Back to Build/check report for BioC 3.21 annotations
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This page was generated on 2025-10-15 07:00 -0400 (Wed, 15 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 29/47HostnameOS / ArchINSTALLBUILDCHECK
HPO.db 0.99.2  (landing page)
Erqiang Hu
Snapshot Date: 2025-10-15 05:45 -0400 (Wed, 15 Oct 2025)
git_url: https://git.bioconductor.org/packages/HPO.db
git_branch: RELEASE_3_21
git_last_commit: 72ed6ba
git_last_commit_date: 2023-06-22 23:53:29 -0400 (Thu, 22 Jun 2023)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped

BUILD results for HPO.db on nebbiolo1

To the developers/maintainers of the HPO.db package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HPO.db
Version: 0.99.2
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HPO.db
StartedAt: 2025-10-15 06:01:55 -0400 (Wed, 15 Oct 2025)
EndedAt: 2025-10-15 06:02:08 -0400 (Wed, 15 Oct 2025)
EllapsedTime: 13.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HPO.db
###
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* checking for file ‘HPO.db/DESCRIPTION’ ... OK
* preparing ‘HPO.db’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘HPO.db’ ...
** this is package ‘HPO.db’ version ‘0.99.2’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘HPO.db’:
 .onLoad failed in loadNamespace() for 'HPO.db', details:
  call: NULL
  error: Replaced by more current version
   Resource removed on: 2024-05-02
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/RtmpMOA9fE/Rinst38134d122326f/HPO.db’
      -----------------------------------
ERROR: package installation failed