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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OSCA.advanced
###
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* checking for file ‘OSCA.advanced/DESCRIPTION’ ... OK
* preparing ‘OSCA.advanced’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘stub.Rmd’ using rmarkdown
[WARNING] This document format requires a nonempty <title> element.
  Defaulting to 'stub.knit' as the title.
  To specify a title, use 'title' in metadata or --metadata title="...".
--- finished re-building ‘stub.Rmd’

"/Library/Frameworks/R.framework/Resources/bin/R" -e "work.dir <- rebook::bookCache('OSCA.advanced'); handle <- rebook::preCompileBook('../inst/book', work.dir=work.dir, desc='../DESCRIPTION'); old.dir <- setwd(work.dir); bookdown::render_book('index.Rmd'); setwd(old.dir); rebook::postCompileBook(work.dir=work.dir, final.dir='../inst/doc/book', handle=handle)"

R version 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> work.dir <- rebook::bookCache('OSCA.advanced'); handle <- rebook::preCompileBook('../inst/book', work.dir=work.dir, desc='../DESCRIPTION'); old.dir <- setwd(work.dir); bookdown::render_book('index.Rmd'); setwd(old.dir); rebook::postCompileBook(work.dir=work.dir, final.dir='../inst/doc/book', handle=handle)
# 
# 
# processing file: more-reddim.Rmd
# 1/64                            
# 2/64 [setup]                    
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# 8/64 [elbow]                    
# 2025-11-07 06:47:45.629 R[88704:654168710] XType: Using static font registry.
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# 24/64 [cluster-pc-choice]        
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# 32/64 [zeisel-parallel-pc-choice]
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# 57/64                            
# 58/64 [unnamed-chunk-21]         
# OMP: Info #276: omp_set_nested routine deprecated, please use omp_set_max_active_levels instead.
# OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead.
# OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
# /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/multiprocessing/resource_tracker.py:279: UserWarning: resource_tracker: There appear to be 1 leaked semaphore objects to clean up at shutdown
#   warnings.warn('resource_tracker: There appear to be %d '
# 59/64                            
# 60/64 [unnamed-chunk-22]         
# Error: mean(vars_d) > mean(vars_t) is not TRUE
# 
# Quitting from more-reddim.Rmd:485-502 [unnamed-chunk-22]
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# <error/rlang_error>
# Error:
# ! mean(vars_d) > mean(vars_t) is not TRUE
# ---
# Backtrace:
#     ▆
#  1. └─base::stopifnot(mean(vars_d) > mean(vars_t))
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# 
# Execution halted

Error in compileChapter(path) : 
  failed to compile '~/Library/Caches/rebook/OSCA.advanced/1.18.0/more-reddim.Rmd'
Calls: <Anonymous> ... .precompile_book -> .locked_compile_chapter -> compileChapter
Execution halted
make: *** [compiled] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) : 
  running 'make' failed
Execution halted