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This page was generated on 2024-12-23 09:40 -0500 (Mon, 23 Dec 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-12-18 r87448) -- "Unsuffered Consequences" | 852 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 114/216 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
HubPub 1.15.0 (landing page) Kayla Interdonato
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||
To the developers/maintainers of the HubPub package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HubPub |
Version: 1.15.0 |
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:HubPub.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings HubPub_1.15.0.tar.gz |
StartedAt: 2024-12-23 08:40:20 -0500 (Mon, 23 Dec 2024) |
EndedAt: 2024-12-23 08:42:00 -0500 (Mon, 23 Dec 2024) |
EllapsedTime: 100.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HubPub.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD check --install=check:HubPub.install-out.txt --library=/home/rapidbuild/bbs-3.21-bioc-rapid/R/site-library --timings HubPub_1.15.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/meat/HubPub.Rcheck’ * using R Under development (unstable) (2024-12-18 r87448) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘HubPub/DESCRIPTION’ ... OK * this is package ‘HubPub’ version ‘1.15.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HubPub’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed add_resource 19.783 0.884 22.018 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
HubPub.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL HubPub ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’ * installing *source* package ‘HubPub’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HubPub)
HubPub.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-12-18 r87448) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(HubPub) > > test_check("HubPub") Package: tstResourcePkg Title: What the Package Does (One Line, Title Case) Version: 0.99.0 Date: 2024-12-23 Authors@R (parsed): * First Last <first.last@example.com> [aut, cre] Description: What the package does (one paragraph). License: Artistic-2.0 BugReports: https://support.bioconductor.org/t/tstResourcePkg Imports: AnnotationHub Suggests: AnnotationHubData Encoding: UTF-8 Roxygen: list(markdown = TRUE) RoxygenNote: 7.0.0 biocViews: AnnotationHub Package: tstAHPkg Title: What the Package Does (One Line, Title Case) Version: 0.99.0 Date: 2024-12-23 Authors@R (parsed): * First Last <first.last@example.com> [aut, cre] Description: What the package does (one paragraph). License: Artistic-2.0 BugReports: https://support.bioconductor.org/t/tstAHPkg Imports: AnnotationHub Suggests: AnnotationHubData Encoding: UTF-8 Roxygen: list(markdown = TRUE) RoxygenNote: 7.0.0 biocViews: AnnotationHub Package: tstEHPkg Title: What the Package Does (One Line, Title Case) Version: 0.99.0 Date: 2024-12-23 Authors@R (parsed): * First Last <first.last@example.com> [aut, cre] Description: What the package does (one paragraph). License: Artistic-2.0 BugReports: https://support.bioconductor.org/t/tstEHPkg Imports: ExperimentHub Suggests: ExperimentHubData Encoding: UTF-8 Roxygen: list(markdown = TRUE) RoxygenNote: 7.0.0 biocViews: ExperimentHub [ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ] > > proc.time() user system elapsed 16.799 0.988 19.323
HubPub.Rcheck/HubPub-Ex.timings
name | user | system | elapsed | |
add_resource | 19.783 | 0.884 | 22.018 | |
create_pkg | 1.288 | 0.085 | 2.327 | |
hub_metadata | 0.001 | 0.000 | 0.002 | |
publish_resource | 0.004 | 0.002 | 0.005 | |