| Back to Rapid builds (Linux only) of a subset of BioC 3.23 Report updated every 6 hours |
This page was generated on 2026-05-07 16:13 -0400 (Thu, 07 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-22 r89945) -- "Because it was There" | 923 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 136/231 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BIOCCHECK | |||||||
| MatrixGenerics 1.24.0 (landing page) Peter Hickey
| teran2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | ERROR | |||||||
|
To the developers/maintainers of the MatrixGenerics package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MatrixGenerics |
| Version: 1.24.0 |
| Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('MatrixGenerics_1.24.0.tar.gz','quit-with-status'=TRUE)" |
| StartedAt: 2026-05-07 15:40:47 -0400 (Thu, 07 May 2026) |
| EndedAt: 2026-05-07 15:40:58 -0400 (Thu, 07 May 2026) |
| EllapsedTime: 11.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: None |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('MatrixGenerics_1.24.0.tar.gz','quit-with-status'=TRUE)"
###
##############################################################################
##############################################################################
── Installing MatrixGenerics ───────────────────────────────────────────────────
✔ Package installed successfully
── MatrixGenerics session metadata ─────────────────────────────────────────────
→ sourceDir: /tmp/Rtmp14Iu1O/file7ef422f827035/MatrixGenerics
→ BiocVersion: 3.23
→ Package: MatrixGenerics
→ PackageVersion: 1.24.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/MatrixGenerics.BiocCheck
→ BiocCheckVersion: 1.48.0
→ sourceDir: /tmp/Rtmp14Iu1O/file7ef422f827035/MatrixGenerics
→ installDir: /tmp/Rtmp14Iu1O/file7ef424b6c7a46
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on MatrixGenerics ─────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
No vignettes found.
ℹ NOTE: Consider adding these automatically suggested biocViews: DataImport
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ NOTE: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
✖ ERROR: No 'vignettes' directory.
* Checking package installation calls in R code...
* Checking for library/require of MatrixGenerics...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 2 times)
• suppressMessages() in R/MatrixGenerics-package.R (line 102, column 13)
• suppressMessages() in R/MatrixGenerics-package.R (line 103, column 13)
* Checking function lengths...
* Checking man page documentation...
ℹ NOTE: Consider adding runnable examples to man pages that document exported
objects.
• internal-helpers.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 300 lines (9%) are > 80 characters long.
First few lines:
• R/MatrixGenerics-package.R#L99 ## See https://github.com/Bi ...
• ...
• R/rowWeightedVars.R#L66 setMethod("colWeightedVars", "matrix_OR_ ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 169 lines (5%) are
not.
First few lines:
• R/MatrixGenerics-package.R#L59 "the missing me ...
• ...
• R/rowWeightedVars.R#L61 matrixStats::colWeightedVars(x, w = w, ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.48.0 results ───────────────────────────────────────────────────
✖ 2 ERRORS | ⚠ 0 WARNINGS | ℹ 8 NOTES
ℹ See the MatrixGenerics.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.