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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('BiocParallel_1.46.0.tar.gz','quit-with-status'=TRUE)"
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── Installing BiocParallel ─────────────────────────────────────────────────────
✔ Package installed successfully
── BiocParallel session metadata ───────────────────────────────────────────────
→ sourceDir: /tmp/Rtmp91d5aH/file73bae6e15a73c/BiocParallel
→ BiocVersion: 3.23
→ Package: BiocParallel
→ PackageVersion: 1.46.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/BiocParallel.BiocCheck
→ BiocCheckVersion: 1.48.0
→ sourceDir: /tmp/Rtmp91d5aH/file73bae6e15a73c/BiocParallel
→ installDir: /tmp/Rtmp91d5aH/file73bae43ed8449
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on BiocParallel ───────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.1.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews: DNASeq
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ NOTE: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • BiocParallel_BatchtoolsParam.Rmd
    • Introduction_To_BiocParallel.Rmd
    • Random_Numbers.Rmd
* Checking package installation calls in R code...
* Checking for library/require of BiocParallel...
! WARNING: Avoid the use of 'library' or 'require' in R code
  Found in files:
    • library() in R/worker.R (line 263, column 40)
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/bpaggregate-methods.R (line 39, column 9)
    • R/utilities.R (line 13, column 12)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • SnowParam-class.R (line 29, column 19)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • cat() in R/progress.R (line 30, column 36)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/BatchtoolsParam-class.R (line 404, column 9)
    • ...
    • R/MulticoreParam-class.R (line 32, column 17)
ℹ NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
  Found in files:
    • R/bploop.R (line 59, column 17)
    • ...
    • R/utilities.R (line 45, column 18)
! WARNING: Remove set.seed usage (found 1 times)
  • set.seed() in R/rng.R (line 43, column 9)
! WARNING: .Deprecated / .Defunct usage (found 2 times)
  • .Defunct() in R/BiocParallel-defunct.R (line 2, column 5)
  • .Defunct() in R/BiocParallel-defunct.R (line 15, column 5)
* Checking parsed R code in R directory, examples, vignettes...
ℹ NOTE: Avoid '<<-' if possible (found 18 times)
  • <<- in R/bpiterate-methods.R (line 10, column 15)
  • ...
  • <<- in R/worker.R (line 237, column 18)
ℹ NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 10 times)
  • suppressWarnings() in R/BatchtoolsParam-class.R (line 49, column 15)
  • ...
  • suppressWarnings() in R/SnowParam-utils.R (line 67, column 9)
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 13
functions greater than 50 lines.
  The longest 5 functions are:
    • .bploop_impl() (R/bploop.R): 124 lines
    • ...
    • bploop.iterate_batchtools() (R/bploop.R): 69 lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/BatchtoolsParam-class.Rd
    • ...
    • man/worker-number.Rd
ℹ NOTE: Consider adding runnable examples to man pages that document exported
objects.
  • bploop.Rd
  • DeveloperInterface.Rd
  • DoparParam-class.Rd
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 28% of man
pages use at least one of these tags.
  Found in files:
    • BatchtoolsParam-class.Rd
    • ...
    • SnowParam-class.Rd
ℹ NOTE: Use donttest instead of dontrun.
  Found in files:
    • BatchtoolsParam-class.Rd
    • ...
    • SnowParam-class.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 15 lines (0%) are > 80 characters long.
  First few lines:
    • R/BatchtoolsParam-class.R#L49 sge = suppressWarnings(system2(" ...
    • ...
    • vignettes/Random_Numbers.Rmd#L7 date: "Edited: 7 September, 2021; Compi
    ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 208 lines (3%) are
not.
  First few lines:
    • R/AllGenerics.R#L3 BPREDO=list(), BPPARAM=bppa ...
    • ...
    • vignettes/Random_Numbers.Rmd#L44 that fail (e.g., because of a bug in `
    ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
✖ ERROR: Unable to find your email in the Support Site: HTTP 404 Not Found.
── BiocCheck v1.48.0 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 4 WARNINGS | ℹ 20 NOTES
ℹ See the BiocParallel.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.