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This page was generated on 2026-04-28 16:18 -0400 (Tue, 28 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-22 r89945) -- "Because it was There" 919
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Package 15/231HostnameOS / ArchINSTALLBUILDCHECK
AnnotationHub 4.3.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2026-04-28 12:00 -0400 (Tue, 28 Apr 2026)
git_url: https://git.bioconductor.org/packages/AnnotationHub
git_branch: devel
git_last_commit: 1e2b7d0
git_last_commit_date: 2026-04-28 08:37:33 -0400 (Tue, 28 Apr 2026)
teran2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped

BUILD results for AnnotationHub on teran2

To the developers/maintainers of the AnnotationHub package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: AnnotationHub
Version: 4.3.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationHub
StartedAt: 2026-04-28 12:31:49 -0400 (Tue, 28 Apr 2026)
EndedAt: 2026-04-28 12:32:39 -0400 (Tue, 28 Apr 2026)
EllapsedTime: 49.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationHub
###
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* checking for file ‘AnnotationHub/DESCRIPTION’ ... OK
* preparing ‘AnnotationHub’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘AnnotationHub-HOWTO.Rmd’ using rmarkdown

Quitting from AnnotationHub-HOWTO.Rmd:40-45 [less-model-org]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.Hub_get1()`:
! no records found for the given index
---
Backtrace:
    ▆
 1. ├─query(ah, c("OrgDb", "maintainer@bioconductor.org"))[[1]]
 2. └─query(ah, c("OrgDb", "maintainer@bioconductor.org"))[[1]]
 3.   └─AnnotationHub (local) .local(x, i, j = j, ...)
 4.     └─AnnotationHub:::.Hub_get1(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'AnnotationHub-HOWTO.Rmd' failed with diagnostics:
no records found for the given index
--- failed re-building ‘AnnotationHub-HOWTO.Rmd’

--- re-building ‘AnnotationHub.Rmd’ using rmarkdown
--- finished re-building ‘AnnotationHub.Rmd’

--- re-building ‘TroubleshootingTheHubs.Rmd’ using rmarkdown
--- finished re-building ‘TroubleshootingTheHubs.Rmd’

SUMMARY: processing the following file failed:
  ‘AnnotationHub-HOWTO.Rmd’

Error: Vignette re-building failed.
Execution halted