Back to Long Tests report for BioC 3.20

This page was generated on 2024-11-16 23:55 -0500 (Sat, 16 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4765
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4538
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/32HostnameOS / ArchCHECK
biodbNcbi 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-11-16 09:55 -0500 (Sat, 16 Nov 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_20
git_last_commit: b6b4ed9
git_last_commit_date: 2024-10-29 11:09:30 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino8Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on lconway

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz
StartedAt: 2024-11-16 16:05:50 -0500 (Sat, 16 Nov 2024)
EndedAt: 2024-11-16 16:15:06 -0500 (Sat, 16 Nov 2024)
EllapsedTime: 556.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-11-16 16:14:01.401][biodb::testContext]
biodb.INFO [2024-11-16 16:14:01.404][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-16 16:14:01.405][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-11-16 16:14:01.406][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-16 16:14:01.407][biodb::testContext]
biodb.INFO [2024-11-16 16:14:01.412][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-16 16:14:01.414][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-11-16 16:14:01.420][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:14:01.421][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-16 16:14:01.422][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-16 16:14:01.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.425][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-16 16:14:01.438][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-16 16:14:01.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.442][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-16 16:14:01.443][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-16 16:14:01.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.445][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-16 16:14:01.446][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-16 16:14:01.447][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-16 16:14:01.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.449][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-16 16:14:01.450][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-16 16:14:01.451][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-16 16:14:01.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.454][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-16 16:14:01.454][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-16 16:14:01.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.458][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-16 16:14:01.458][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-16 16:14:01.459][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-16 16:14:01.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.462][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-16 16:14:01.462][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-16 16:14:01.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.465][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-16 16:14:01.466][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-16 16:14:01.467][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-16 16:14:01.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.469][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-16 16:14:01.470][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-16 16:14:01.471][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-16 16:14:01.471][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-16 16:14:01.472][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-16 16:14:01.473][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-16 16:14:01.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.476][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-16 16:14:01.476][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-16 16:14:01.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.479][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-16 16:14:01.480][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-16 16:14:01.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.482][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-16 16:14:01.483][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-16 16:14:01.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.486][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-16 16:14:01.487][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-16 16:14:01.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.489][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-16 16:14:01.490][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-16 16:14:01.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.493][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-16 16:14:01.493][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-16 16:14:01.510][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-16 16:14:01.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.513][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-16 16:14:01.514][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-16 16:14:01.515][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-16 16:14:01.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.519][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-16 16:14:01.548][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.559][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-16 16:14:01.560][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.561][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:01.562][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.563][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.564][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.564][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.565][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-16 16:14:01.566][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:01.567][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.568][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-16 16:14:01.568][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:01.569][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.570][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.570][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:01.570][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:14:01.570][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:14:01.570][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-16 16:14:01.570][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-16 16:14:01.571][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:01.572][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.573][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.573][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:01.574][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.575][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.576][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.577][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.577][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:01.578][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:01.579][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.579][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.580][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-16 16:14:01.582][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.582][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-16 16:14:01.583][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.584][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:01.585][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.585][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.586][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.587][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.588][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-16 16:14:01.589][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:01.589][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.590][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-16 16:14:01.591][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:01.592][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.592][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.593][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:01.593][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:14:01.593][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:14:01.593][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-16 16:14:01.593][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-16 16:14:01.594][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:01.594][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.595][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.596][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:01.596][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.597][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.598][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.599][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.599][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:01.600][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:01.601][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.601][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.602][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-16 16:14:01.603][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.604][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-16 16:14:01.605][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.606][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:01.607][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.608][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.608][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.609][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.610][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-16 16:14:01.611][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:01.611][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.612][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-16 16:14:01.613][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:01.614][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.614][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.615][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.616][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:01.616][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.617][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.618][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:01.619][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.620][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.620][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.621][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.622][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:01.622][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:01.623][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.624][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.625][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-16 16:14:01.626][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.627][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-16 16:14:01.627][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.628][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:01.629][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.630][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.630][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.631][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.632][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-16 16:14:01.633][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:01.633][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.634][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-16 16:14:01.635][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:01.635][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.636][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.637][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.638][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:01.638][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.639][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.640][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:01.640][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.641][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.642][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.643][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.643][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:01.644][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:01.645][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.645][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.648][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:14:01.649][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.711][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-16 16:14:01.715][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-16 16:14:01.716][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-16 16:14:01.717][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-16 16:14:01.718][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-16 16:14:01.720][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-16 16:14:01.721][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-16 16:14:01.722][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-16 16:14:01.723][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-16 16:14:01.724][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-16 16:14:01.725][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-16 16:14:01.726][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-16 16:14:01.727][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-16 16:14:01.728][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-16 16:14:01.729][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-16 16:14:01.730][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-16 16:14:01.731][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-16 16:14:01.732][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-16 16:14:01.733][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-16 16:14:01.734][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-16 16:14:01.735][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-16 16:14:01.736][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-16 16:14:01.737][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-16 16:14:01.739][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-16 16:14:01.740][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-16 16:14:01.741][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-16 16:14:01.742][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-16 16:14:01.743][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-16 16:14:01.744][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-16 16:14:01.745][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-16 16:14:01.746][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-16 16:14:01.747][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-16 16:14:01.748][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-16 16:14:01.749][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-16 16:14:01.750][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-16 16:14:01.751][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-16 16:14:01.752][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-16 16:14:01.753][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-16 16:14:01.754][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-16 16:14:01.755][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-16 16:14:01.756][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-16 16:14:01.757][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-16 16:14:01.758][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-16 16:14:01.759][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-16 16:14:01.760][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-16 16:14:01.761][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-16 16:14:01.762][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-16 16:14:01.763][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-16 16:14:01.764][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-16 16:14:01.765][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-16 16:14:01.766][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-16 16:14:01.767][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-16 16:14:01.768][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-16 16:14:01.769][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-16 16:14:01.770][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-16 16:14:01.771][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-16 16:14:01.772][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-16 16:14:01.773][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-16 16:14:01.774][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-16 16:14:01.775][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-16 16:14:01.776][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-16 16:14:01.777][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-16 16:14:01.778][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-16 16:14:01.779][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-16 16:14:01.780][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-16 16:14:01.781][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-16 16:14:01.782][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-16 16:14:01.783][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-16 16:14:01.784][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-16 16:14:01.785][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-16 16:14:01.786][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-16 16:14:01.787][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-16 16:14:01.788][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-16 16:14:01.789][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-16 16:14:01.790][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-16 16:14:01.791][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-16 16:14:01.792][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-16 16:14:01.793][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-16 16:14:01.794][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-16 16:14:01.795][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-16 16:14:01.796][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-16 16:14:01.797][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-16 16:14:01.798][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-16 16:14:01.802][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-16 16:14:01.803][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-16 16:14:01.806][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:14:01.806][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.807][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:01.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:01.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:01.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:01.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:01.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:01.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:01.896][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-11-16 16:14:01.903][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-11-16 16:14:01.905][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.905][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-11-16 16:14:01.906][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.907][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:01.908][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.908][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.909][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.910][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.910][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-11-16 16:14:01.911][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:01.912][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.913][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-11-16 16:14:01.913][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:01.914][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-11-16 16:14:01.914][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-11-16 16:14:01.915][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.916][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.916][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-16 16:14:01.917][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.918][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.918][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:01.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.920][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.920][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.921][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-16 16:14:01.921][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-11-16 16:14:01.922][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:01.922][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:01.923][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.924][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.925][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-11-16 16:14:01.926][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.927][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-11-16 16:14:01.927][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.928][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:01.929][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.930][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.930][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.931][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.932][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:14:01.932][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:01.933][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.934][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-11-16 16:14:01.935][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:01.935][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-11-16 16:14:01.935][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-11-16 16:14:01.935][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-11-16 16:14:01.935][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-11-16 16:14:01.935][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-11-16 16:14:01.935][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-11-16 16:14:01.936][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.937][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:01.937][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-16 16:14:01.938][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.939][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.939][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:01.940][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.941][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.941][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.942][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:01.942][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:14:01.943][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:01.943][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:01.944][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.945][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:01.946][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-16 16:14:01.947][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.970][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-11-16 16:14:01.971][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.972][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:01.973][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.973][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.974][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.975][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.976][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:14:01.976][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:01.977][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.978][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.979][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:01.980][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:01.981][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:01.981][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:14:01.981][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:14:01.982][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-16 16:14:01.982][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.983][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.984][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:01.984][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:01.985][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:01.986][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.987][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:01.987][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:14:01.987][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-16 16:14:01.987][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:01.988][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:01.989][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.989][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-16 16:14:01.990][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-16 16:14:01.991][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.992][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-11-16 16:14:01.993][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.994][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:01.994][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.995][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.996][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.996][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:01.997][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:14:01.998][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:01.999][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:01.999][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-11-16 16:14:02.000][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:02.001][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-11-16 16:14:02.001][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-16 16:14:02.002][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:02.002][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:02.003][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-16 16:14:02.004][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:02.004][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:02.005][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:02.006][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:02.006][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:02.007][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:02.008][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:02.008][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:14:02.008][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-16 16:14:02.009][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:02.009][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:02.010][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:02.011][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-16 16:14:02.015][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-11-16 16:14:02.016][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-16 16:14:02.018][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-16 16:14:02.019][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-11-16 16:14:02.020][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-16 16:14:02.021][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-11-16 16:14:02.039][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-11-16 16:14:02.040][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-11-16 16:14:02.043][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-11-16 16:14:02.046][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-11-16 16:14:02.049][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:02.050][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:02.051][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-11-16 16:14:02.052][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:02.052][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:02.053][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-11-16 16:14:02.061][biodb::testThat]
biodb.INFO [2024-11-16 16:14:02.062][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-11-16 16:14:02.062][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:02.063][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:02.067][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-11-16 16:14:02.069][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:02.071][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-16 16:14:02.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:02.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:02.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:02.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:02.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:02.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:02.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:02.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.119][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.128][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.129][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.159][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:02.218][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-11-16 16:14:02.220][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.223][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.246][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.249][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.252][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:02.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:02.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.255][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:02.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.335][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.348][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.351][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.354][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.361][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.362][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.363][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.364][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.373][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.374][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.376][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.380][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.382][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.396][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-11-16 16:14:02.421][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:02.422][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-16 16:14:02.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:02.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:02.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:02.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:02.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:02.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:02.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:02.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.454][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.455][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.457][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.462][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:02.494][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-11-16 16:14:02.509][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.512][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.515][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.518][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.521][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:02.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:02.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:02.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.594][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.595][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.607][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.610][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.614][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.617][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.618][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.619][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.620][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.630][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.631][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.632][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.637][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.639][ef$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:02.647][biodb::testThat]
biodb.INFO [2024-11-16 16:14:02.648][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-16 16:14:02.648][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:02.649][biodb::testThat]
biodb.DEBUG[2024-11-16 16:14:02.651][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-11-16 16:14:02.656][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-16 16:14:02.658][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2024-11-16 16:14:02.660][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-11-16 16:14:02.663][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-11-16 16:14:02.663][conn$getEntryContent] 2 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:02.664][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-11-16 16:14:02.665][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-11-16 16:14:02.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:02.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:02.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:02.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:02.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:02.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:02.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.691][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.692][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.693][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.694][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:02.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:02.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:02.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:02.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:02.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:02.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:02.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:02.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.742][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.743][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.744][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.745][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:02.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:02.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:02.786][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-11-16 16:14:02.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:02.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:02.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:02.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:02.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:02.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:02.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:02.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:02.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:02.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:02.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:02.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:02.821][biodb::testThat]
biodb.INFO [2024-11-16 16:14:02.822][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-16 16:14:02.822][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:02.823][biodb::testThat]
biodb.INFO [2024-11-16 16:14:02.829][biodb::testThat]
biodb.INFO [2024-11-16 16:14:02.829][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-11-16 16:14:02.830][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:02.831][biodb::testThat]
biodb.WARN [2024-11-16 16:14:02.845][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-11-16 16:14:02.860][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-11-16 16:14:02.868][biodb::testThat]
biodb.INFO [2024-11-16 16:14:02.869][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-11-16 16:14:02.870][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:02.871][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:02.890][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.896][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.899][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:02.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:02.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.904][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:02.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:02.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.926][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.931][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:02.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:02.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:02.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:02.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:02.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:02.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:02.944][biodb::testThat]
biodb.INFO [2024-11-16 16:14:02.945][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-11-16 16:14:02.945][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:02.946][biodb::testThat]
biodb.INFO [2024-11-16 16:14:02.954][biodb::testThat]
biodb.INFO [2024-11-16 16:14:02.955][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-11-16 16:14:02.956][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:02.957][biodb::testThat]
biodb.INFO [2024-11-16 16:14:02.963][biodb::testThat]
biodb.INFO [2024-11-16 16:14:02.964][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-11-16 16:14:02.965][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:02.966][biodb::testThat]
biodb.DEBUG[2024-11-16 16:14:02.969][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-11-16 16:14:04.539][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-11-16 16:14:05.989][biodb::testThat]
biodb.INFO [2024-11-16 16:14:05.990][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-11-16 16:14:05.991][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:05.992][biodb::testThat]
biodb.INFO [2024-11-16 16:14:05.997][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-16 16:14:05.998][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-11-16 16:14:05.999][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-11-16 16:14:06.000][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-16 16:14:06.000][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.002][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.003][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-16 16:14:06.011][biodb::testContext]
biodb.INFO [2024-11-16 16:14:06.012][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-16 16:14:06.013][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-11-16 16:14:06.014][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-16 16:14:06.014][biodb::testContext]
biodb.INFO [2024-11-16 16:14:06.016][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-16 16:14:06.017][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-11-16 16:14:06.020][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:14:06.021][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-16 16:14:06.022][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-16 16:14:06.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.025][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-16 16:14:06.026][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-16 16:14:06.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.028][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-16 16:14:06.029][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-16 16:14:06.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.032][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-16 16:14:06.032][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-16 16:14:06.033][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-16 16:14:06.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.036][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-16 16:14:06.037][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-16 16:14:06.037][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-16 16:14:06.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.040][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-16 16:14:06.041][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-16 16:14:06.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.043][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-16 16:14:06.044][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-16 16:14:06.045][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-16 16:14:06.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.055][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-16 16:14:06.056][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-16 16:14:06.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.058][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-16 16:14:06.059][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-16 16:14:06.060][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-16 16:14:06.061][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.062][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-16 16:14:06.063][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-16 16:14:06.064][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-16 16:14:06.065][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-16 16:14:06.065][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-16 16:14:06.066][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-16 16:14:06.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.069][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-16 16:14:06.069][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-16 16:14:06.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.072][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-16 16:14:06.073][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-16 16:14:06.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.076][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-16 16:14:06.076][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-16 16:14:06.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.079][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-16 16:14:06.080][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-16 16:14:06.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.082][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-16 16:14:06.083][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-16 16:14:06.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.086][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-16 16:14:06.086][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-16 16:14:06.102][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-16 16:14:06.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.105][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-16 16:14:06.106][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-16 16:14:06.107][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-16 16:14:06.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.110][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-16 16:14:06.111][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.112][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-16 16:14:06.112][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.113][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:06.114][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.115][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.115][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.116][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.117][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-16 16:14:06.118][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:06.118][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.119][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-16 16:14:06.120][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:06.121][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.121][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.122][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:06.122][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:14:06.122][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:14:06.122][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-16 16:14:06.122][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-16 16:14:06.123][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:06.123][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.124][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.125][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:06.126][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.126][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.127][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.128][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.128][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:06.129][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:06.130][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.130][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.131][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-16 16:14:06.133][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.133][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-16 16:14:06.134][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.135][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:06.136][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.136][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.137][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.138][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.139][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-16 16:14:06.139][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:06.140][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.141][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-16 16:14:06.142][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:06.142][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.143][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.144][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:06.144][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:14:06.144][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:14:06.144][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-16 16:14:06.144][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-16 16:14:06.144][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:06.145][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.146][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.147][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:06.147][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.148][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.153][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.154][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.154][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:06.155][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:06.156][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.156][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.157][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-16 16:14:06.158][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.159][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-16 16:14:06.160][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.161][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:06.161][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.162][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.163][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.163][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.164][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-16 16:14:06.165][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:06.166][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.167][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-16 16:14:06.167][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:06.168][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.169][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.170][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.170][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:06.171][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.172][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.172][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:06.173][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.174][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.174][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.175][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.176][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:06.177][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:06.178][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.178][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.179][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-16 16:14:06.181][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.182][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-16 16:14:06.182][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.183][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:06.184][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.184][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.185][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.186][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.187][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-16 16:14:06.187][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:06.188][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.189][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-16 16:14:06.190][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:06.190][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.191][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.192][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.192][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:06.193][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.194][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.195][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:06.195][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.196][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.197][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.197][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.198][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:06.199][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:06.199][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.200][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.201][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:14:06.202][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.245][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.261][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-16 16:14:06.262][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-16 16:14:06.263][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-16 16:14:06.264][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-16 16:14:06.265][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-16 16:14:06.266][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-16 16:14:06.267][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-16 16:14:06.268][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-16 16:14:06.269][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-16 16:14:06.270][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-16 16:14:06.271][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-16 16:14:06.272][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-16 16:14:06.273][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-16 16:14:06.274][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-16 16:14:06.275][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-16 16:14:06.276][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-16 16:14:06.277][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-16 16:14:06.278][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-16 16:14:06.279][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-16 16:14:06.280][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-16 16:14:06.281][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-16 16:14:06.282][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-16 16:14:06.283][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-16 16:14:06.284][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-16 16:14:06.285][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-16 16:14:06.286][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-16 16:14:06.287][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-16 16:14:06.288][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-16 16:14:06.289][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-16 16:14:06.290][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-16 16:14:06.291][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-16 16:14:06.292][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-16 16:14:06.293][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-16 16:14:06.294][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-16 16:14:06.295][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-16 16:14:06.296][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-16 16:14:06.297][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-16 16:14:06.298][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-16 16:14:06.299][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-16 16:14:06.300][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-16 16:14:06.301][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-16 16:14:06.302][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-16 16:14:06.303][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-16 16:14:06.304][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-16 16:14:06.305][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-16 16:14:06.306][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-16 16:14:06.307][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-16 16:14:06.308][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-16 16:14:06.309][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-16 16:14:06.310][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-16 16:14:06.311][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-16 16:14:06.316][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-16 16:14:06.317][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-16 16:14:06.318][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-16 16:14:06.319][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-16 16:14:06.320][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-16 16:14:06.321][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-16 16:14:06.321][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-16 16:14:06.322][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-16 16:14:06.323][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-16 16:14:06.324][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-16 16:14:06.325][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-16 16:14:06.326][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-16 16:14:06.327][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-16 16:14:06.328][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-16 16:14:06.329][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-16 16:14:06.330][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-16 16:14:06.331][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-16 16:14:06.332][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-16 16:14:06.333][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-16 16:14:06.334][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-16 16:14:06.335][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-16 16:14:06.336][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-16 16:14:06.337][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-16 16:14:06.338][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-16 16:14:06.339][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-16 16:14:06.340][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-16 16:14:06.341][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-16 16:14:06.342][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-16 16:14:06.343][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-16 16:14:06.344][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-16 16:14:06.345][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-16 16:14:06.346][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-16 16:14:06.347][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-16 16:14:06.348][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-16 16:14:06.349][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:14:06.350][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.351][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:06.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:06.436][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-11-16 16:14:06.437][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-11-16 16:14:06.439][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.439][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-11-16 16:14:06.440][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.441][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:06.442][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.442][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.443][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.444][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.445][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-11-16 16:14:06.445][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:06.446][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.447][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-11-16 16:14:06.448][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:06.448][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-11-16 16:14:06.448][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-11-16 16:14:06.449][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.450][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.451][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-16 16:14:06.451][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.452][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.453][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:06.453][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.454][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.455][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.455][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-16 16:14:06.455][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-11-16 16:14:06.456][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:06.457][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:06.457][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.458][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.459][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-11-16 16:14:06.460][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.461][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-11-16 16:14:06.462][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.463][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:06.463][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.464][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.465][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.465][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.466][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:14:06.467][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:06.468][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.469][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-11-16 16:14:06.470][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:06.470][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-11-16 16:14:06.470][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-11-16 16:14:06.470][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-11-16 16:14:06.470][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-11-16 16:14:06.470][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-11-16 16:14:06.470][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-11-16 16:14:06.471][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.472][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:06.473][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-16 16:14:06.473][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.474][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.475][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:06.479][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.480][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.481][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.481][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:06.481][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:14:06.482][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:06.483][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:06.483][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.484][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.485][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-16 16:14:06.486][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.487][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-11-16 16:14:06.488][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.489][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:06.490][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.490][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.491][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.492][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.492][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:14:06.493][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:06.494][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.494][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-11-16 16:14:06.495][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.496][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:06.497][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.498][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:06.498][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:14:06.498][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:14:06.498][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-16 16:14:06.499][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.500][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.500][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:06.501][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.502][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.502][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.503][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:06.503][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:14:06.503][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-16 16:14:06.504][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:06.504][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:06.505][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.506][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-16 16:14:06.507][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-16 16:14:06.508][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.509][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-11-16 16:14:06.510][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.510][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:06.511][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.512][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.513][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.513][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.514][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:14:06.515][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:06.516][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.516][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-11-16 16:14:06.517][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:06.518][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-11-16 16:14:06.518][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-16 16:14:06.518][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:06.519][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:06.520][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-16 16:14:06.521][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.521][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.522][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:06.523][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:06.523][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:06.524][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:06.525][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:06.525][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:14:06.525][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-16 16:14:06.526][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:06.526][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:06.527][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:06.528][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-16 16:14:06.529][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-11-16 16:14:06.530][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-16 16:14:06.531][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-16 16:14:06.532][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-11-16 16:14:06.533][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-16 16:14:06.534][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-11-16 16:14:06.540][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-11-16 16:14:06.541][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-11-16 16:14:06.542][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-11-16 16:14:06.543][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-11-16 16:14:06.544][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:06.545][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:06.546][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-11-16 16:14:06.547][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:06.547][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:06.599][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-11-16 16:14:06.602][biodb::testThat]
biodb.INFO [2024-11-16 16:14:06.603][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-11-16 16:14:06.604][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:06.604][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:06.609][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-11-16 16:14:06.610][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:06.612][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-16 16:14:06.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:06.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:06.632][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.634][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.639][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:06.639][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:06.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.642][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:06.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:06.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.645][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:06.646][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:06.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.647][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.654][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:06.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:06.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.657][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:06.658][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:06.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.659][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.660][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:06.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:06.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.663][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:06.664][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:06.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.665][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.666][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:06.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:06.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.669][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:06.670][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:06.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.672][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.674][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:06.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:06.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:06.713][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-11-16 16:14:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.717][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:06.733][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-16 16:14:06.755][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-11-16 16:14:06.756][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-11-16 16:14:06.757][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-11-16 16:14:06.769][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-16 16:14:06.770][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:06.771][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-16 16:14:06.780][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:06.781][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:06.782][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-16 16:14:06.783][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:06.784][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-16 16:14:06.784][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:06.785][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-16 16:14:06.799][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-11-16 16:14:06.800][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-11-16 16:14:06.801][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-16 16:14:06.803][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-11-16 16:14:06.805][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:06.806][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2024-11-16 16:14:06.807][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:06.808][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:06.809][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-16 16:14:06.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:06.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:06.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:06.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:06.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:06.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:06.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:06.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.834][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:06.834][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:06.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:06.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:06.869][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-11-16 16:14:06.874][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.879][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.882][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:06.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:06.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:06.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:06.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:06.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.891][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:06.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:06.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.893][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:06.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:06.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:06.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.988][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.990][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:06.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:06.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.001][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:07.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:07.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.004][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:07.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:07.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.007][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:07.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:07.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.010][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:07.011][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:07.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.012][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.013][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:07.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:07.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.023][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:07.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:07.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.026][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:07.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:07.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.029][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:07.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:07.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.032][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:07.033][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:07.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.034][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.035][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:07.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:07.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.045][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.048][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.051][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.054][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.055][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.057][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.057][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.081][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.082][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.083][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.094][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.097][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:07.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:07.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.100][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:07.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.103][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:07.104][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:07.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.105][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.106][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:07.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.115][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:07.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:07.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:07.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:07.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:07.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.125][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:07.125][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:07.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.127][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.128][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:07.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:07.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.137][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.140][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.150][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:07.151][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.153][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.163][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.164][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.166][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.170][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:07.171][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:07.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.177][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:07.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:07.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.179][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.184][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:07.185][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:07.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.186][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.190][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:07.191][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:07.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.193][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.197][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:07.197][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:07.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.203][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.204][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.205][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.210][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.211][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.212][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.219][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-11-16 16:14:07.220][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:07.221][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-16 16:14:07.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:07.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:07.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:07.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:07.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:07.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:07.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:07.240][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:07.241][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:07.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.251][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:07.252][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:07.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.254][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.255][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:07.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:07.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.258][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:07.259][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:07.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.260][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.262][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:07.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:07.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.265][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:07.265][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:07.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.267][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.268][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:07.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:07.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.271][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:07.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:07.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.273][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.275][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:07.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:07.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.278][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.279][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:07.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:07.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:07.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:07.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:07.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:07.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:07.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:07.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:07.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:07.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:07.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:07.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:07.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:07.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:07.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:07.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:07.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:07.320][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-11-16 16:14:07.322][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.325][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:07.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:07.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:07.341][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-16 16:14:07.341][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-11-16 16:14:07.373][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-16 16:14:07.384][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-11-16 16:14:07.385][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-16 16:14:07.390][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:07.391][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:07.392][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-16 16:14:07.393][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:07.393][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-16 16:14:07.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:07.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:07.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:07.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:07.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:07.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:07.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:07.405][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-11-16 16:14:07.419][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:07.420][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:07.421][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-11-16 16:14:08.787][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-11-16 16:14:10.184][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:10.186][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-11-16 16:14:10.198][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-11-16 16:14:10.200][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-11-16 16:14:10.202][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:10.202][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:10.203][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-16 16:14:10.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:10.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:10.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:10.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:10.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:10.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:10.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:10.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.235][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:10.236][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.237][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.239][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:10.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:10.273][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-11-16 16:14:10.280][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.283][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.286][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.289][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:10.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:10.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.292][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:10.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:10.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.295][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:10.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:10.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.298][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:10.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:10.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.364][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.367][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.377][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:10.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.381][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.389][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.392][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:10.393][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.394][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.395][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:10.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.405][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:10.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.408][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.411][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.414][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:10.415][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.416][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.417][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:10.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.427][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.430][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.433][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.436][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.437][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.440][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.460][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.461][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.462][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.478][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:10.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:10.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.481][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:10.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:10.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.484][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:10.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:10.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.487][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:10.488][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:10.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.490][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:10.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:10.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.500][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:10.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:10.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:10.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:10.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:10.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.509][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:10.510][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:10.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.511][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.512][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:10.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:10.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.522][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:10.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.525][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.528][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.531][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:10.532][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.534][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:10.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.549][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.550][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.551][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.556][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.557][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.558][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.562][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.563][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.565][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.569][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:10.570][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:10.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.571][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.576][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.576][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.578][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.582][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:10.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:10.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.585][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.590][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.591][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.597][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.597][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.599][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.608][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-11-16 16:14:10.609][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:10.610][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-16 16:14:10.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:10.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:10.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:10.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:10.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:10.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:10.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:10.635][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.638][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.643][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:10.643][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:10.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.645][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.646][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:10.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:10.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.649][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:10.654][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.656][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.658][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:10.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.661][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:10.662][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.665][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:10.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.668][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:10.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:10.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.670][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.672][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:10.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:10.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.675][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.676][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.681][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:10.720][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-11-16 16:14:10.722][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.725][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:10.742][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-16 16:14:10.742][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-11-16 16:14:10.743][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-16 16:14:10.744][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-11-16 16:14:10.745][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:10.746][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-11-16 16:14:10.747][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:10.748][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:10.749][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-16 16:14:10.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:10.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:10.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:10.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:10.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:10.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:10.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:10.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.770][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:10.771][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.772][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:10.806][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-11-16 16:14:10.807][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.815][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.818][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:10.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.821][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:10.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:10.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.824][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:10.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:10.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.827][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:10.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:10.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:10.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:10.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:10.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.895][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.897][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:10.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:10.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.907][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:10.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.910][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.913][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.916][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:10.917][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.918][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.919][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:10.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:10.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.929][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:10.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.933][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.936][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.939][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:10.939][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.941][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.941][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:10.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:10.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.951][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.955][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.958][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.961][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.961][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.963][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.964][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:10.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.987][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.988][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.990][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:10.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:10.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:10.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.000][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:11.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.004][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:11.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:11.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.007][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:11.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:11.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.010][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:11.011][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:11.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.013][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.013][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:11.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:11.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.024][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:11.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:11.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:11.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:11.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:11.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:11.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.033][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:11.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:11.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.036][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:11.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:11.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.050][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:11.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.054][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.058][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.061][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:11.061][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.064][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:11.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.074][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.075][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.076][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.081][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:11.081][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:11.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.083][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.087][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:11.088][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:11.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.089][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.093][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:11.094][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:11.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.095][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.099][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:11.100][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:11.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.101][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.106][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:11.107][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:11.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.108][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.113][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:11.114][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:11.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.115][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.120][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:11.120][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:11.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.129][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-11-16 16:14:11.131][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:11.132][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-16 16:14:11.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:11.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:11.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:11.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:11.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:11.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:11.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:11.157][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:11.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:11.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.160][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:11.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:11.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.164][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:11.165][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:11.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.166][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.167][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:11.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:11.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.171][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:11.172][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:11.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.174][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:11.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:11.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.177][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:11.178][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:11.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.180][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.181][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:11.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:11.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.185][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:11.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:11.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.189][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:11.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:11.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.192][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:11.193][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:11.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.194][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.197][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:11.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:11.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:11.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:11.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:11.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:11.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:11.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:11.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:11.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:11.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:11.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:11.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:11.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:11.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:11.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:11.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:11.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:11.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:11.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:11.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:11.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:11.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:11.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:11.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:11.242][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-11-16 16:14:11.244][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.247][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:11.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:11.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:11.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:11.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:11.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:11.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:11.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:11.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:11.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:11.259][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-16 16:14:11.260][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-11-16 16:14:11.261][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-16 16:14:11.262][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-11-16 16:14:11.263][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-16 16:14:11.263][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:11.264][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:11.265][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-16 16:14:11.266][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:11.267][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-16 16:14:11.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:11.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:11.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:11.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:11.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:11.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:11.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:11.306][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-11-16 16:14:11.317][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:11.318][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:11.329][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-11-16 16:14:13.987][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-11-16 16:14:15.394][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:15.396][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-11-16 16:14:15.399][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-11-16 16:14:15.401][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-11-16 16:14:15.403][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:15.404][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:15.405][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-16 16:14:15.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:15.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:15.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:15.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:15.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:15.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:15.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:15.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.428][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:15.429][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.430][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.436][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:15.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:15.471][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-11-16 16:14:15.472][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.475][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.477][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.481][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:15.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:15.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.483][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:15.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:15.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.486][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:15.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:15.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.489][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:15.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:15.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.567][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.580][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:15.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:15.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.583][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:15.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:15.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.586][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:15.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:15.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.589][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:15.590][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:15.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.591][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.592][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:15.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:15.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.607][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:15.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:15.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.611][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:15.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:15.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.614][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:15.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:15.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.617][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:15.618][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:15.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.619][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.620][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:15.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:15.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.630][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.633][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.636][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.639][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.640][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.642][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.662][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.663][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.665][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.675][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:15.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:15.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.679][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:15.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.687][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:15.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:15.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.690][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:15.691][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:15.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.692][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.693][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:15.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:15.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:15.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:15.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:15.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:15.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:15.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.712][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:15.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:15.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.714][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.715][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:15.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:15.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.725][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.728][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.731][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.734][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:15.735][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.736][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.737][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:15.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.747][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.748][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.754][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:15.755][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:15.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.760][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.767][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.772][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:15.773][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:15.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.779][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:15.780][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:15.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.781][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.786][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:15.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:15.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.788][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.792][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.793][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.795][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.799][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.800][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.801][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.813][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-11-16 16:14:15.815][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:15.816][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-16 16:14:15.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:15.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:15.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:15.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:15.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:15.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:15.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:15.851][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.854][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.860][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:15.860][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:15.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.862][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.864][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:15.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:15.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.867][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:15.868][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:15.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.869][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.872][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:15.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:15.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.875][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:15.876][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:15.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.877][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.880][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:15.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:15.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.883][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:15.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:15.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.890][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.893][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:15.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:15.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.897][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.897][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.899][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.904][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:15.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:15.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:15.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:15.949][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-11-16 16:14:15.950][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:15.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:15.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:15.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:15.965][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-16 16:14:15.966][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-11-16 16:14:15.967][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-16 16:14:15.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-11-16 16:14:15.969][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-16 16:14:15.970][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:15.970][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:15.971][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-16 16:14:15.976][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:15.977][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-16 16:14:15.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:15.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:15.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:15.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:15.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:15.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:15.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:15.989][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-11-16 16:14:15.991][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:15.991][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:15.992][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-11-16 16:14:17.246][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-11-16 16:14:18.591][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:18.593][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-11-16 16:14:18.596][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-11-16 16:14:18.598][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-11-16 16:14:18.600][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:18.601][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:18.602][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-16 16:14:18.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:18.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:18.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:18.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:18.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:18.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:18.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:18.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.629][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:18.630][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.631][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:18.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:18.671][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-11-16 16:14:18.672][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.675][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.678][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.681][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:18.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:18.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.684][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:18.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:18.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.687][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:18.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:18.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:18.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:18.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:18.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:18.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:18.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:18.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:18.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:18.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:18.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.755][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.758][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:18.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:18.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.772][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:18.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:18.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.775][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:18.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:18.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.778][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:18.779][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:18.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.781][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:18.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:18.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.791][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:18.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:18.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.795][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:18.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:18.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.798][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:18.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:18.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.801][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:18.801][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:18.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.803][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.803][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:18.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:18.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.818][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.821][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.824][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.827][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.828][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.829][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.848][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.849][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.851][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.861][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:18.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:18.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.864][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:18.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:18.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.868][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:18.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:18.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.871][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:18.871][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:18.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.873][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.873][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:18.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:18.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.883][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:18.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:18.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.886][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:18.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:18.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:18.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:18.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.897][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:18.898][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:18.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.899][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.900][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:18.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:18.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.910][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:18.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.913][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.916][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.919][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:18.919][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.921][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.922][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.932][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.932][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:18.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.934][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.938][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:18.939][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:18.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.941][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.945][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:18.946][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:18.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.952][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:18.953][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:18.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.954][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.959][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:18.959][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:18.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.961][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.965][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:18.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:18.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.967][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.977][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.978][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:18.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.980][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.984][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.985][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:18.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:18.986][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:18.993][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-11-16 16:14:18.994][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:18.995][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-16 16:14:18.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:18.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:18.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:19.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:19.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:19.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:19.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:19.011][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:19.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:19.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.013][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:19.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:19.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.018][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:19.019][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:19.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.020][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.021][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:19.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:19.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.024][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:19.025][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:19.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.028][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:19.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:19.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.031][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:19.032][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:19.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.035][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:19.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:19.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.038][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:19.039][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:19.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.040][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.041][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:19.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:19.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.044][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:19.045][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:19.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.046][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.048][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:19.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:19.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:19.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:19.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:19.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:19.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:19.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:19.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:19.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:19.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:19.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:19.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:19.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:19.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:19.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:19.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:19.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:19.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:19.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:19.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:19.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:19.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:19.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:19.090][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-11-16 16:14:19.092][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:19.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:19.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.095][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:19.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:19.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:19.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:19.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:19.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:19.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:19.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:19.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:19.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:19.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:19.107][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-16 16:14:19.108][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-11-16 16:14:19.108][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-16 16:14:19.109][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-11-16 16:14:19.110][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-16 16:14:19.111][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:19.112][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:19.113][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-16 16:14:19.114][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:19.114][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-16 16:14:19.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:19.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:19.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:19.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:19.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:19.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:19.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:19.125][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-11-16 16:14:19.127][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:19.128][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:19.129][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-11-16 16:14:20.508][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-11-16 16:14:21.983][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:21.992][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-11-16 16:14:21.996][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-11-16 16:14:21.998][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-11-16 16:14:22.000][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:22.001][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:22.002][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-16 16:14:22.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:22.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:22.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:22.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:22.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:22.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:22.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:22.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.029][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:22.030][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.031][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.032][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:22.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:22.065][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-11-16 16:14:22.066][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.069][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.072][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.082][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:22.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:22.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:22.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:22.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.088][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:22.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:22.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:22.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:22.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.151][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.280][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.300][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:22.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:22.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.303][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:22.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:22.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.306][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:22.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:22.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.309][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:22.310][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:22.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.311][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.312][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:22.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:22.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.321][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:22.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:22.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.324][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:22.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:22.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.327][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:22.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:22.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.330][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:22.331][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:22.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.332][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.333][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:22.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:22.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.342][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.345][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.348][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.351][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.351][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.353][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.372][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.373][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.374][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.385][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:22.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:22.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:22.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:22.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.392][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:22.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.395][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:22.396][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:22.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.397][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.398][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:22.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:22.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:22.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:22.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:22.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:22.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:22.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.418][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:22.419][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:22.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.421][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.422][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:22.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:22.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.432][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.435][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.438][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.442][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:22.442][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.445][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:22.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.456][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.457][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.458][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.463][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:22.464][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:22.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.465][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.470][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.472][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.477][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:22.478][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:22.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.479][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.484][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:22.485][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:22.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.487][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.491][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:22.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:22.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.494][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.498][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.499][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.501][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.506][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.507][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.508][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.515][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-11-16 16:14:22.517][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:22.518][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-16 16:14:22.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:22.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:22.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:22.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:22.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:22.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:22.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:22.535][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.536][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.537][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.542][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:22.543][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:22.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.544][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.545][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:22.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:22.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.549][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:22.550][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:22.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.551][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.552][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:22.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:22.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.556][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:22.557][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:22.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.558][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.560][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:22.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:22.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.563][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:22.564][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:22.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.565][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.567][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:22.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:22.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.570][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.571][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.572][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.574][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:22.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:22.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:22.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:22.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:22.617][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-11-16 16:14:22.619][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:22.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:22.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:22.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:22.633][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-16 16:14:22.633][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-11-16 16:14:22.634][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-16 16:14:22.635][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-11-16 16:14:22.636][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-16 16:14:22.637][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:22.638][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:22.639][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-16 16:14:22.639][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:22.640][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-16 16:14:22.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:22.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:22.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:22.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:22.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:22.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:22.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:22.651][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-11-16 16:14:22.653][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:22.654][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:22.655][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-11-16 16:14:24.070][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-11-16 16:14:25.428][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:25.430][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-11-16 16:14:25.433][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-11-16 16:14:25.435][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-11-16 16:14:25.437][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:25.438][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:25.439][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-16 16:14:25.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:25.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:25.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:25.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:25.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:25.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:25.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:25.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.463][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:25.463][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.465][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.466][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:25.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:25.500][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-11-16 16:14:25.501][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.504][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.507][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.510][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:25.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:25.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:25.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:25.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.516][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:25.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:25.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:25.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:25.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.581][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.583][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.594][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:25.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.597][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.600][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.603][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:25.604][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.605][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.606][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.616][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:25.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:25.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.619][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:25.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:25.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.622][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:25.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:25.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.625][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:25.626][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:25.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.627][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.628][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:25.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:25.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.638][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.642][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.645][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.648][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.649][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.651][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.679][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.679][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.681][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.691][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:25.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.693][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:25.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:25.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.696][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:25.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:25.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.699][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:25.700][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:25.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.701][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.702][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:25.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:25.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:25.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:25.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:25.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:25.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:25.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:25.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.720][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:25.721][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:25.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.723][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:25.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:25.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.733][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:25.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.736][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.739][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.741][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:25.742][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.744][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.744][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-16 16:14:25.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.754][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.755][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.757][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.761][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:25.762][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:25.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.763][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.768][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.774][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:25.775][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:25.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.776][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.780][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.781][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.783][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.787][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:25.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:25.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.789][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.793][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.794][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.795][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.799][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.800][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.802][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.806][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-11-16 16:14:25.807][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:25.808][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-16 16:14:25.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:25.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:25.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:25.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:25.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:25.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:25.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:25.819][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.820][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.821][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.825][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:25.826][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:25.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.827][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.828][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:25.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:25.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.831][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:25.832][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:25.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.833][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.834][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:25.835][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.837][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:25.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.840][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:25.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:25.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.842][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.843][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.844][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:25.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.845][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:25.875][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-11-16 16:14:25.877][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.879][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:25.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:25.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.885][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:25.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:25.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:25.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.892][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:25.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:25.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:25.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:25.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.954][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.956][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:25.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.971][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:25.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.974][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.977][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.980][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:25.981][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.982][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.983][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:25.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:25.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:25.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:25.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.996][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:25.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:25.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.001][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.002][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.003][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.004][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.014][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.017][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.021][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.022][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.023][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.027][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.028][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.030][ef$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:26.036][biodb::testThat]
biodb.INFO [2024-11-16 16:14:26.037][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-16 16:14:26.038][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:26.039][biodb::testThat]
biodb.DEBUG[2024-11-16 16:14:26.040][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-11-16 16:14:26.041][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-11-16 16:14:26.042][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2024-11-16 16:14:26.044][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2024-11-16 16:14:26.074][loadFileContents] Loaded 8 files from cache: [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2024-11-16 16:14:26.076][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:26.077][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-11-16 16:14:26.078][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-11-16 16:14:26.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:26.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:26.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:26.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:26.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:26.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:26.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:26.097][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.098][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.099][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.104][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.105][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.106][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.107][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.110][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.111][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.114][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.117][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.118][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.120][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.123][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.127][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.130][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.131][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.135][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:26.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:26.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:26.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:26.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:26.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:26.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:26.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:26.183][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.184][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.190][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.190][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.192][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.193][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.196][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.197][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.198][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.200][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.203][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.203][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.205][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.206][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.209][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.211][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.213][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.216][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.217][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.218][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.221][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:26.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:26.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:26.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:26.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:26.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:26.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:26.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:26.274][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.276][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.281][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.282][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.283][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.285][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.288][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.288][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.291][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.294][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.295][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.297][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.298][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.301][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.303][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.305][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.308][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.309][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.311][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.314][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:26.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:26.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:26.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:26.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:26.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:26.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:26.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:26.374][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.376][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.377][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.381][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.382][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.384][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.389][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.390][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.391][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.396][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.396][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.398][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.399][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.402][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.405][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.406][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.409][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.410][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.411][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.414][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:26.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:26.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:26.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:26.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:26.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:26.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:26.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:26.476][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.477][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.479][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.484][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.485][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.487][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.489][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.492][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.493][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.495][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.497][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.500][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.501][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.502][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.504][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.508][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.510][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.512][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.515][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.516][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.517][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.523][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:26.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:26.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:26.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:26.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:26.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:26.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:26.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:26.574][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.577][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.581][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.582][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.583][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.584][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.588][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.588][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.590][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.594][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.595][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.597][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.600][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.602][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.604][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.607][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.607][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.609][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.611][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:26.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:26.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:26.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:26.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:26.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:26.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:26.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:26.657][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.660][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.664][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.665][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.666][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.667][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.670][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.671][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.673][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.674][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.677][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.678][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.679][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.680][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.683][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.685][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.686][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.704][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.704][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.706][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.708][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:26.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:26.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:26.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:26.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:26.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:26.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:26.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:26.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:26.745][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.746][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.747][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.751][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.752][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.753][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.754][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-16 16:14:26.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-16 16:14:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.758][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-16 16:14:26.758][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-16 16:14:26.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.760][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.760][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.761][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.762][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.763][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-16 16:14:26.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-16 16:14:26.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.766][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-16 16:14:26.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.768][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.769][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.770][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-16 16:14:26.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.771][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-16 16:14:26.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:26.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:26.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:26.864][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-11-16 16:14:26.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:26.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:26.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:26.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:26.970][biodb::testThat]
biodb.INFO [2024-11-16 16:14:26.971][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-16 16:14:26.972][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:26.973][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:26.975][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:26.976][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.977][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:26.978][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-11-16 16:14:26.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:26.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:26.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:26.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:26.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:27.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:27.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:27.005][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-11-16 16:14:27.009][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-11-16 16:14:27.011][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:27.012][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-11-16 16:14:27.013][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:27.015][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2024-11-16 16:14:27.016][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-11-16 16:14:27.030][biodb::testThat]
biodb.INFO [2024-11-16 16:14:27.031][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-11-16 16:14:27.032][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:27.033][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:27.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:27.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:27.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:27.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:27.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:27.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:27.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:27.071][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-11-16 16:14:27.073][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:27.074][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-11-16 16:14:27.075][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:27.076][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-11-16 16:14:27.091][biodb::testThat]
biodb.INFO [2024-11-16 16:14:27.092][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-11-16 16:14:27.093][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:27.094][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:27.102][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:27.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:27.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:27.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:27.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:27.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:27.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:27.117][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-11-16 16:14:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.121][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.123][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.126][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:27.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:27.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.129][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:27.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:27.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:27.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:27.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.135][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:27.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:27.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.139][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:27.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:27.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:27.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.147][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:27.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:27.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.150][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:27.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:27.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:27.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:27.161][biodb::testThat]
biodb.INFO [2024-11-16 16:14:27.162][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-11-16 16:14:27.162][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:27.163][biodb::testThat]
biodb.INFO [2024-11-16 16:14:27.173][biodb::testThat]
biodb.INFO [2024-11-16 16:14:27.174][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-11-16 16:14:27.175][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:27.175][biodb::testThat]
biodb.INFO [2024-11-16 16:14:27.183][biodb::testThat]
biodb.INFO [2024-11-16 16:14:27.183][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-11-16 16:14:27.184][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:27.185][biodb::testThat]
biodb.DEBUG[2024-11-16 16:14:27.189][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-11-16 16:14:30.886][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-11-16 16:14:35.353][biodb::testThat]
biodb.INFO [2024-11-16 16:14:35.354][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-11-16 16:14:35.354][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:35.355][biodb::testThat]
biodb.INFO [2024-11-16 16:14:35.361][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-16 16:14:35.362][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-11-16 16:14:35.363][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-11-16 16:14:35.364][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-11-16 16:14:35.369][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-11-16 16:14:35.370][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-16 16:14:35.371][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.372][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.373][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-16 16:14:35.377][biodb::testContext]
biodb.INFO [2024-11-16 16:14:35.378][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-16 16:14:35.378][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-11-16 16:14:35.379][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-16 16:14:35.380][biodb::testContext]
biodb.INFO [2024-11-16 16:14:35.381][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-16 16:14:35.383][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-11-16 16:14:35.386][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:14:35.387][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-16 16:14:35.387][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-16 16:14:35.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.390][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-16 16:14:35.391][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-16 16:14:35.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.394][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-16 16:14:35.394][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-16 16:14:35.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.397][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-16 16:14:35.398][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-16 16:14:35.398][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-16 16:14:35.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.401][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-16 16:14:35.402][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-16 16:14:35.403][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-16 16:14:35.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.406][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-16 16:14:35.406][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-16 16:14:35.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.409][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-16 16:14:35.410][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-16 16:14:35.410][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-16 16:14:35.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.413][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-16 16:14:35.414][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-16 16:14:35.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.417][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-16 16:14:35.417][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-16 16:14:35.418][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-16 16:14:35.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.421][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-16 16:14:35.421][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-16 16:14:35.422][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-16 16:14:35.423][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-16 16:14:35.424][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-16 16:14:35.424][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-16 16:14:35.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.427][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-16 16:14:35.428][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-16 16:14:35.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.430][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-16 16:14:35.438][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-16 16:14:35.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.441][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-16 16:14:35.442][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-16 16:14:35.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.445][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-16 16:14:35.446][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-16 16:14:35.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.449][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-16 16:14:35.450][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-16 16:14:35.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.452][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-16 16:14:35.453][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-16 16:14:35.470][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-16 16:14:35.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.474][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-16 16:14:35.474][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-16 16:14:35.476][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-16 16:14:35.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.479][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-16 16:14:35.480][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.481][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-16 16:14:35.482][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.482][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:35.483][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.484][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.485][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.485][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.486][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-16 16:14:35.487][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:35.488][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.488][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-16 16:14:35.489][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:35.490][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.491][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.491][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:35.491][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:14:35.491][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:14:35.491][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-16 16:14:35.491][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-16 16:14:35.492][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:35.493][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.493][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.494][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:35.495][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.496][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.497][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.497][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.498][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:35.499][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:35.500][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.500][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.501][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-16 16:14:35.502][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.503][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-16 16:14:35.504][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.505][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:35.506][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.506][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.507][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.508][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.509][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-16 16:14:35.510][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:35.510][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.511][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-16 16:14:35.512][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:35.513][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.514][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.514][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:35.514][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:14:35.514][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:14:35.514][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-16 16:14:35.514][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-16 16:14:35.515][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:35.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.517][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:35.518][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.519][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.520][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.520][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.521][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:35.522][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:35.523][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.523][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.524][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-16 16:14:35.526][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.527][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-16 16:14:35.527][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.528][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:35.529][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.530][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.530][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.531][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.532][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-16 16:14:35.532][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:35.533][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.534][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-16 16:14:35.535][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:35.535][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.536][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.537][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.537][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:35.538][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.539][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.540][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:35.540][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.541][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.542][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.542][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.543][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:35.544][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:35.545][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.546][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.547][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-16 16:14:35.548][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.549][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-16 16:14:35.550][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.550][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:35.551][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.552][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.553][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.553][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.554][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-16 16:14:35.555][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:35.556][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.557][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-16 16:14:35.558][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:35.558][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.559][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.560][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.561][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:14:35.562][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.563][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.563][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:35.564][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.565][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.566][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.566][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.567][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:35.568][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:35.568][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.569][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.570][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:14:35.571][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.627][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-16 16:14:35.628][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-16 16:14:35.629][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-16 16:14:35.630][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-16 16:14:35.631][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-16 16:14:35.632][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-16 16:14:35.633][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-16 16:14:35.634][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-16 16:14:35.635][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-16 16:14:35.636][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-16 16:14:35.637][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-16 16:14:35.638][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-16 16:14:35.639][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-16 16:14:35.640][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-16 16:14:35.641][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-16 16:14:35.642][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-16 16:14:35.643][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-16 16:14:35.644][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-16 16:14:35.645][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-16 16:14:35.646][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-16 16:14:35.647][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-16 16:14:35.648][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-16 16:14:35.649][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-16 16:14:35.650][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-16 16:14:35.651][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-16 16:14:35.652][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-16 16:14:35.653][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-16 16:14:35.654][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-16 16:14:35.655][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-16 16:14:35.656][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-16 16:14:35.657][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-16 16:14:35.658][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-16 16:14:35.659][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-16 16:14:35.660][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-16 16:14:35.661][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-16 16:14:35.662][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-16 16:14:35.663][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-16 16:14:35.664][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-16 16:14:35.666][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-16 16:14:35.667][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-16 16:14:35.668][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-16 16:14:35.669][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-16 16:14:35.670][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-16 16:14:35.671][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-16 16:14:35.672][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-16 16:14:35.673][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-16 16:14:35.674][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-16 16:14:35.675][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-16 16:14:35.676][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-16 16:14:35.677][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-16 16:14:35.678][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-16 16:14:35.680][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-16 16:14:35.681][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-16 16:14:35.682][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-16 16:14:35.683][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-16 16:14:35.684][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-16 16:14:35.685][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-16 16:14:35.687][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-16 16:14:35.688][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-16 16:14:35.689][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-16 16:14:35.690][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-16 16:14:35.691][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-16 16:14:35.692][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-16 16:14:35.693][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-16 16:14:35.694][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-16 16:14:35.695][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-16 16:14:35.696][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-16 16:14:35.697][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-16 16:14:35.698][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-16 16:14:35.699][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-16 16:14:35.700][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-16 16:14:35.701][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-16 16:14:35.702][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-16 16:14:35.703][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-16 16:14:35.704][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-16 16:14:35.705][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-16 16:14:35.706][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-16 16:14:35.707][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-16 16:14:35.708][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-16 16:14:35.709][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-16 16:14:35.710][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-16 16:14:35.711][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-16 16:14:35.712][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-16 16:14:35.713][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-16 16:14:35.721][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-16 16:14:35.729][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:14:35.730][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.731][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:14:35.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:35.810][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-11-16 16:14:35.811][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-11-16 16:14:35.813][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.814][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-11-16 16:14:35.814][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.815][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:35.816][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.817][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.817][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.818][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.819][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-11-16 16:14:35.820][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:35.820][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.821][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-11-16 16:14:35.822][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:35.823][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-11-16 16:14:35.823][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-11-16 16:14:35.823][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.824][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.825][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-16 16:14:35.826][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.826][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.827][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:35.828][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.828][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.829][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.830][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-16 16:14:35.830][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-11-16 16:14:35.831][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:35.831][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:35.832][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.833][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.833][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-11-16 16:14:35.835][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.835][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-11-16 16:14:35.836][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.837][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:35.838][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.839][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.839][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.840][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.841][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:14:35.842][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:35.842][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.843][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-11-16 16:14:35.844][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-11-16 16:14:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-11-16 16:14:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-11-16 16:14:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-11-16 16:14:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-11-16 16:14:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-11-16 16:14:35.846][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.846][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:35.847][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-16 16:14:35.848][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.849][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.850][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:35.850][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.851][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.852][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.853][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:35.853][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:14:35.853][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:35.854][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:35.855][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.856][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.857][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-16 16:14:35.858][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.859][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-11-16 16:14:35.860][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.861][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:35.862][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.862][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.863][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.864][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.865][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:14:35.866][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:35.866][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.867][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.868][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:14:35.869][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.870][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:14:35.870][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:14:35.870][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:14:35.871][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-16 16:14:35.872][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.872][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.873][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:35.874][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.874][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.875][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.876][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:35.876][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:14:35.876][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-16 16:14:35.876][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:35.877][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:35.878][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.878][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-16 16:14:35.879][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-16 16:14:35.881][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.882][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-11-16 16:14:35.883][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.883][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:14:35.884][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.885][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.886][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.887][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.887][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:14:35.888][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:14:35.889][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.889][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-11-16 16:14:35.890][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:14:35.891][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-11-16 16:14:35.891][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-16 16:14:35.892][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:14:35.892][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:14:35.893][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-16 16:14:35.894][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.895][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.895][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:14:35.896][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:14:35.897][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:14:35.897][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:14:35.898][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:35.898][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:14:35.898][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-16 16:14:35.899][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:14:35.900][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:14:35.900][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:14:35.901][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-16 16:14:35.902][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-11-16 16:14:35.904][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-16 16:14:35.905][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-16 16:14:35.906][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-11-16 16:14:35.907][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-16 16:14:35.908][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-11-16 16:14:35.914][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-16 16:14:35.915][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-11-16 16:14:35.916][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-16 16:14:35.917][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-11-16 16:14:35.918][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-16 16:14:35.918][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-16 16:14:35.919][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-11-16 16:14:35.920][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-16 16:14:35.921][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-16 16:14:35.922][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-16 16:14:35.926][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-11-16 16:14:35.930][biodb::testThat]
biodb.INFO [2024-11-16 16:14:35.930][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-11-16 16:14:35.931][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:35.932][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:35.934][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-11-16 16:14:35.935][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:35.938][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:35.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:35.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:35.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:35.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:35.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:35.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:35.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:35.951][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:35.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:35.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.953][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:35.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:35.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.957][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:35.958][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:35.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.960][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:35.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:35.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.964][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:35.964][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:35.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.966][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:35.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:35.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.970][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:35.971][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:35.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.972][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:35.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.976][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:35.977][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:35.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.978][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:35.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:35.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.982][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:35.983][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:35.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.984][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:35.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:35.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.988][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:35.989][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:35.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.990][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:35.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:35.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:35.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:35.995][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:35.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:35.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:36.008][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:36.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.009][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:36.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:36.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.013][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.014][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.015][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.019][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.020][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.022][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.025][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:36.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:36.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.031][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.032][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.037][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.038][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.043][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.052][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.060][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:36.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.069][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:36.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:36.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:36.119][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-11-16 16:14:36.121][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:36.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:36.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:36.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:36.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:36.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:36.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:36.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.136][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:36.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:36.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.139][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:36.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:36.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.201][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.212][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:36.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.222][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:36.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.224][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.224][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:36.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:36.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.244][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:36.245][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.246][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:36.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.266][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.283][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.288][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.291][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.292][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.293][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.312][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.313][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.314][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.334][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.335][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.336][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.356][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.356][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.377][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.378][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.379][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.399][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.400][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.401][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.422][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.422][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.424][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.443][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.444][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:36.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:36.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:36.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:36.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.466][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:36.466][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:36.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.468][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:36.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:36.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:36.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:36.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:36.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:36.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.510][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:36.511][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:36.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.512][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:36.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.523][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.525][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.530][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.531][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.532][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.537][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.537][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.539][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.543][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.544][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.545][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.549][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.550][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.551][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.561][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.561][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.563][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.567][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.568][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.570][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.574][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:36.574][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:36.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.576][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.580][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.581][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.586][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.587][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.588][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.593][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.595][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.599][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.600][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.601][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.606][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:36.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:36.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.608][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.612][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.613][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.614][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.618][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.619][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.621][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.625][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-11-16 16:14:36.626][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:36.627][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:36.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:36.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:36.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:36.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:36.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:36.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:36.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:36.638][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.640][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.644][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.645][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.650][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.651][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.653][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.657][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.657][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.659][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.663][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.664][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.665][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.669][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.670][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.671][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.675][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:36.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.678][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:36.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.681][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.683][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:36.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:36.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.689][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:36.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:36.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.693][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.695][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:36.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.699][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.700][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.701][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.702][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.705][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:36.706][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.707][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.711][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.712][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.713][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.717][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.718][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:36.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.723][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:36.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:36.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.733][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:36.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:36.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.741][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:36.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:36.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.750][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:36.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:36.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.759][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:36.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:36.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:36.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:36.800][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-11-16 16:14:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:36.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:36.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.805][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:36.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:36.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:36.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:36.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:36.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.816][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:36.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.819][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:36.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.883][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.885][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:36.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:36.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.904][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:36.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.925][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.926][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.927][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.928][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:36.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.946][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.947][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.948][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:36.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:36.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.959][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.962][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.968][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.969][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.970][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.971][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:36.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:36.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.989][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.990][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.991][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:36.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:36.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:36.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.011][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.012][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.013][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.033][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.034][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:37.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:37.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:37.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:37.055][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:37.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.057][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:37.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.077][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.077][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.079][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.098][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.099][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.100][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.124][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.125][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.145][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.146][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.147][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.166][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.167][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.168][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.188][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.189][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.190][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.201][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.203][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.208][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.208][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.214][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.214][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.216][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.220][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.221][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.222][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.226][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.227][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.228][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.232][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.233][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.234][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.238][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:37.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:37.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.240][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.245][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:37.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:37.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.247][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.253][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.257][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:37.258][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:37.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.259][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.263][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:37.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:37.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.266][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:37.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:37.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.272][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.276][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.277][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.278][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.282][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:37.283][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:37.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.285][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.289][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.290][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.291][ef$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:37.298][biodb::testThat]
biodb.INFO [2024-11-16 16:14:37.299][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-16 16:14:37.300][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:37.300][biodb::testThat]
biodb.DEBUG[2024-11-16 16:14:37.302][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-11-16 16:14:37.303][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-16 16:14:37.305][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-11-16 16:14:37.307][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-11-16 16:14:37.309][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-11-16 16:14:37.310][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:37.311][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-11-16 16:14:37.312][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:37.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:37.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:37.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:37.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:37.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:37.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:37.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:37.323][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.325][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.329][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.330][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.335][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.336][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.341][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.342][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.343][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.347][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.348][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.353][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.354][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.355][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.359][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:37.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:37.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.361][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.365][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:37.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:37.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.367][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:37.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:37.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.371][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:37.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:37.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.373][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:37.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.380][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.383][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:37.384][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:37.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.386][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:37.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.390][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:37.390][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:37.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.397][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:37.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:37.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.401][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:37.401][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:37.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.403][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.407][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.407][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.409][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.412][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:37.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.421][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:37.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.429][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:37.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:37.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.446][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:37.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:37.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:37.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:37.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:37.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:37.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:37.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:37.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:37.487][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.488][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.493][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.494][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.495][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.499][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.500][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.501][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.505][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.506][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.507][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.511][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.512][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.513][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.517][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.518][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.520][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.523][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:37.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:37.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.526][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.527][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:37.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:37.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.530][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:37.530][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:37.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.532][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:37.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.536][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:37.537][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:37.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.538][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:37.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:37.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.542][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.543][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.544][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:37.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.548][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:37.549][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:37.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.550][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.551][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:37.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:37.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.555][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:37.555][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:37.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.557][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.561][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:37.562][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:37.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.567][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.568][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.570][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:37.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.573][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:37.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.582][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:37.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.591][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:37.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.599][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:37.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:37.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:37.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:37.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:37.662][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-11-16 16:14:37.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:37.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:37.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:37.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:37.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:37.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:37.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:37.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:14:37.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:37.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:14:37.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:37.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:14:37.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:37.690][biodb::testThat]
biodb.INFO [2024-11-16 16:14:37.691][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-16 16:14:37.691][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:37.692][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:37.694][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.695][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.696][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:37.697][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-11-16 16:14:37.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:37.719][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-11-16 16:14:37.724][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-11-16 16:14:37.726][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:37.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-11-16 16:14:37.728][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:37.730][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-11-16 16:14:37.731][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-11-16 16:14:37.742][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:37.743][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:37.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.744][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:37.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:37.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.747][ef$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:37.751][biodb::testThat]
biodb.INFO [2024-11-16 16:14:37.752][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-11-16 16:14:37.753][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:37.753][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:37.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:37.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:37.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:37.793][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-11-16 16:14:37.795][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:37.796][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-11-16 16:14:37.797][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:37.798][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-11-16 16:14:37.813][biodb::testThat]
biodb.INFO [2024-11-16 16:14:37.814][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-11-16 16:14:37.814][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:37.815][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:37.823][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:37.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:37.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.826][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:37.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:37.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:37.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:37.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.832][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:37.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:37.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.838][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:37.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:37.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:37.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.844][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:37.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:37.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.847][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:14:37.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:14:37.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:37.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:14:37.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.853][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:37.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:37.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.856][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:14:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:14:37.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.859][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:37.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:14:37.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:37.862][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:37.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:14:37.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:37.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:37.870][biodb::testThat]
biodb.INFO [2024-11-16 16:14:37.871][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-11-16 16:14:37.872][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:37.872][biodb::testThat]
biodb.INFO [2024-11-16 16:14:37.880][biodb::testThat]
biodb.INFO [2024-11-16 16:14:37.881][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-11-16 16:14:37.881][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:37.882][biodb::testThat]
biodb.INFO [2024-11-16 16:14:37.889][biodb::testThat]
biodb.INFO [2024-11-16 16:14:37.890][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-11-16 16:14:37.891][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:37.892][biodb::testThat]
biodb.DEBUG[2024-11-16 16:14:37.894][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-11-16 16:14:38.085][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-11-16 16:14:38.218][biodb::testThat]
biodb.INFO [2024-11-16 16:14:38.219][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-11-16 16:14:38.220][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:38.221][biodb::testThat]
biodb.DEBUG[2024-11-16 16:14:38.283][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-11-16 16:14:38.341][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:38.342][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:38.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.344][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.346][ef$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:38.348][biodb::testThat]
biodb.INFO [2024-11-16 16:14:38.348][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-11-16 16:14:38.349][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:38.350][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:38.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:38.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:38.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:38.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:38.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:38.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:38.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:38.446][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-11-16 16:14:38.449][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:38.450][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-11-16 16:14:38.451][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:38.452][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-11-16 16:14:38.504][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-11-16 16:14:38.507][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:38.508][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-11-16 16:14:38.509][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:38.510][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-11-16 16:14:38.522][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-16 16:14:38.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-16 16:14:38.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:38.551][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:38.554][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:38.555][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-16 16:14:38.556][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:38.557][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-16 16:14:38.570][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-11-16 16:14:38.572][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:38.573][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-11-16 16:14:38.574][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:38.576][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-11-16 16:14:38.798][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-11-16 16:14:38.801][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:38.802][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-11-16 16:14:38.803][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:38.805][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-11-16 16:14:38.824][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-11-16 16:14:38.827][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:38.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-11-16 16:14:38.829][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:38.830][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-11-16 16:14:38.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:38.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:38.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:38.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:38.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:38.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:38.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:38.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:38.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:38.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:38.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:38.863][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:38.866][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:38.867][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-11-16 16:14:38.868][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:38.869][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-11-16 16:14:38.880][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-11-16 16:14:38.882][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:38.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-11-16 16:14:38.885][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:38.886][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-11-16 16:14:38.898][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-11-16 16:14:38.901][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:38.902][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-11-16 16:14:38.902][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:38.904][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-11-16 16:14:38.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-11-16 16:14:38.923][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:38.924][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-11-16 16:14:38.925][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:38.926][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-11-16 16:14:38.940][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:38.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:38.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:38.949][biodb::testThat]
biodb.INFO [2024-11-16 16:14:38.950][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-11-16 16:14:38.951][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:38.951][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:38.953][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-16 16:14:38.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-16 16:14:38.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.956][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-16 16:14:38.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-16 16:14:38.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:38.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:38.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:38.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:38.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:38.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:38.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:38.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:38.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:38.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:38.998][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:39.000][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:39.001][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-16 16:14:39.002][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:39.003][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-16 16:14:39.004][private$loadEntries] Creating entries from ids [3]: "172394306, 172394297, 172393920".
biodb.DEBUG[2024-11-16 16:14:39.005][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-16 16:14:39.006][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172394306, 172394297, 172393920".
biodb.TRACE[2024-11-16 16:14:39.007][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-11-16 16:14:39.010][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172394306.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172394297.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172393920.xml".
biodb.DEBUG[2024-11-16 16:14:39.011][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:39.012][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-16 16:14:39.013][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:39.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:39.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:39.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:39.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:39.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:39.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:39.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:39.025][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.025][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.031][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.032][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.037][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.038][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.046][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.050][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.051][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.052][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.056][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.057][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.058][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.086][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.091][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.097][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.101][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:39.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:39.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.103][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.104][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:39.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:39.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.107][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:39.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:39.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.109][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:39.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:39.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:39.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:39.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.116][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:39.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:39.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.120][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.120][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.126][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:39.126][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:39.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.128][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.129][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:39.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.132][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:39.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:39.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.134][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:39.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.138][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.138][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.140][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.144][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.145][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.146][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.150][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:39.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.159][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:39.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.168][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:39.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.177][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:39.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.186][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:39.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:39.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:39.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:39.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:39.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:39.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:39.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:39.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:39.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:39.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:39.230][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.236][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.237][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.239][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.243][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.243][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.245][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.249][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.250][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.251][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.255][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.256][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.257][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.261][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.262][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.263][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.267][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:39.268][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:39.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.269][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:39.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.273][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:39.274][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:39.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.276][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:39.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:39.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:39.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:39.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.282][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.286][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.287][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.288][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.292][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:39.293][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:39.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.295][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:39.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:39.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.298][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:39.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:39.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:39.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:39.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.304][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.305][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.307][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.311][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.312][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.317][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:39.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.331][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:39.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.349][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:39.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.357][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:39.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:39.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:39.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:39.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:39.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:39.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:39.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:39.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:39.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:39.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:39.399][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.401][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.405][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.406][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.408][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.411][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.412][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.414][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.418][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.418][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.420][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.424][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.424][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.426][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.430][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.430][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.432][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.436][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:39.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:39.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.438][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.439][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:39.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:39.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.442][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:39.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:39.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:39.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:39.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:39.449][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:39.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.450][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:39.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:39.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.456][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:39.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.460][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:39.461][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:39.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.462][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.463][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:39.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:39.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.466][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:39.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:39.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.468][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.472][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.473][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.475][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:39.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.479][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.479][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:39.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.484][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:39.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:39.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.493][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:39.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:39.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.502][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:39.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:39.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:39.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:39.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:39.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:39.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:39.583][self$createEntryFromContent] Accession numbers: 172394306, 172394297, 172393920.
biodb.DEBUG[2024-11-16 16:14:39.584][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:39.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:39.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:39.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:39.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:39.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:39.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:39.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:39.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.600][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.600][private$selectFields]
biodb.TRACE[2024-11-16 16:14:39.601][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:39.602][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:39.602][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.603][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.604][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.605][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.606][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.607][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.608][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.609][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.610][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.610][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.611][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.612][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.613][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.629][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394306].
biodb.DEBUG[2024-11-16 16:14:39.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:39.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:39.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:39.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:39.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:39.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:39.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.645][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.645][private$selectFields]
biodb.TRACE[2024-11-16 16:14:39.646][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:39.647][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:39.647][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.648][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.649][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.650][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.653][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.654][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.655][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.655][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.656][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.658][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:39.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.668][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-11-16 16:14:39.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:39.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:39.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:39.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:39.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:39.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:39.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:39.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.684][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.684][private$selectFields]
biodb.TRACE[2024-11-16 16:14:39.685][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:39.686][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:39.686][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.690][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.690][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.691][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.692][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.694][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:39.695][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.697][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.697][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:39.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:39.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:39.707][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172393920].
biodb.DEBUG[2024-11-16 16:14:39.708][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:39.708][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:39.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:39.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:39.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:39.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:39.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:39.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:39.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:39.724][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:39.726][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:39.727][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:39.728][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:39.870][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:39.871][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:39.872][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:39.873][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:39.971][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:39.973][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-11-16 16:14:39.976][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-11-16 16:14:39.977][private$loadEntries] Creating entries from ids [3]: "172416823, 172416819, 172416818".
biodb.DEBUG[2024-11-16 16:14:39.978][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-16 16:14:39.979][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172416823, 172416819, 172416818".
biodb.TRACE[2024-11-16 16:14:39.980][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-16 16:14:39.981][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:39.982][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:39.983][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:39.983][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:39.984][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-16 16:14:39.985][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-16 16:14:39.986][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172416823,172416819,172416818/XML".
biodb.DEBUG[2024-11-16 16:14:39.988][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:39.988][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:39.989][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172416823,172416819,172416818/XML".
biodb.TRACE[2024-11-16 16:14:40.084][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172416823,172416819,172416818/XML).
biodb.TRACE[2024-11-16 16:14:40.248][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416823.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416819.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416818.xml"
biodb.DEBUG[2024-11-16 16:14:40.251][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:40.252][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-16 16:14:40.253][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:40.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:40.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:40.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:40.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:40.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:40.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:40.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:40.265][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.267][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.271][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.271][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.273][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.277][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.278][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.279][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.283][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.284][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.285][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.289][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.290][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.291][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.295][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.296][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.297][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.311][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:40.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.314][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.317][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:40.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:40.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.319][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:40.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:40.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:40.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:40.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.325][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:40.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:40.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.329][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.334][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:40.335][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:40.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.336][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.337][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:40.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:40.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.340][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:40.341][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:40.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.343][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:40.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:40.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.347][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.347][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.353][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.353][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.355][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.359][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:40.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.367][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:40.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.376][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:40.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.385][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:40.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.393][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:40.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:40.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:40.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:40.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:40.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:40.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:40.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:40.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:40.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:40.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:40.436][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.438][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.442][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.443][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.449][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.449][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.451][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.455][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.455][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.457][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.461][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.462][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.463][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.467][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.468][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.469][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.473][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:40.474][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.475][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.476][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:40.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.479][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:40.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:40.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:40.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:40.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.485][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:40.486][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:40.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.487][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:40.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:40.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.491][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.492][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.493][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.497][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:40.498][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:40.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.499][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.500][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:40.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:40.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.503][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:40.504][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:40.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.505][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:40.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:40.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.509][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.510][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.512][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.516][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.517][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.518][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.522][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:40.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.531][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:40.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.539][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:40.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.554][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:40.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:40.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:40.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:40.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:40.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:40.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:40.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:40.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:40.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:40.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:40.604][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.606][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.610][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.611][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.612][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.616][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.617][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.619][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.623][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.623][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.625][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.629][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.630][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.631][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.635][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.636][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.637][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.641][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:40.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:40.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.647][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:40.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:40.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.650][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:40.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.653][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:40.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:40.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.656][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:40.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.662][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:40.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.666][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:40.666][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:40.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:40.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:40.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.672][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:40.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:40.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.674][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:40.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.678][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.679][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.680][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.684][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.685][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:40.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:40.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:40.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.699][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.708][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:40.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.716][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:40.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:40.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.725][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:40.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:40.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:40.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:40.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:40.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:40.785][self$createEntryFromContent] Accession numbers: 172416823, 172416819, 172416818.
biodb.DEBUG[2024-11-16 16:14:40.807][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:40.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:40.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:40.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:40.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:40.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:40.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:40.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:40.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.838][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.839][private$selectFields]
biodb.TRACE[2024-11-16 16:14:40.840][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:40.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:40.842][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.842][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.843][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.844][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.847][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.848][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.849][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.849][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.850][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.851][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.852][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:40.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.862][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-11-16 16:14:40.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:40.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:40.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:40.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:40.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:40.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:40.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.878][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.879][private$selectFields]
biodb.TRACE[2024-11-16 16:14:40.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:40.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:40.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.882][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.884][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.886][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.887][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.888][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.889][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.891][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.892][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-11-16 16:14:40.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:40.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:40.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:40.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:40.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:40.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:40.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:40.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.917][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.918][private$selectFields]
biodb.TRACE[2024-11-16 16:14:40.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:40.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:40.920][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.920][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.922][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.923][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.924][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.925][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.926][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.927][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:40.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.928][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.929][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.930][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:40.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:40.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416818].
biodb.DEBUG[2024-11-16 16:14:40.940][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:40.941][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-16 16:14:40.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:40.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:40.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:41.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:41.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:41.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:41.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:41.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:41.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:41.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:41.029][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:41.032][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:41.033][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-16 16:14:41.033][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:41.035][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-16 16:14:41.037][private$loadEntries] Creating entries from ids [3]: "172391226, 172389755, 172389592".
biodb.DEBUG[2024-11-16 16:14:41.037][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-16 16:14:41.038][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172391226, 172389755, 172389592".
biodb.TRACE[2024-11-16 16:14:41.039][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-11-16 16:14:41.042][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172391226.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172389755.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172389592.xml".
biodb.DEBUG[2024-11-16 16:14:41.043][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:41.044][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-16 16:14:41.045][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:41.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:41.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:41.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:41.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:41.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:41.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:41.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:41.055][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.056][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.057][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.061][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.062][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.064][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.068][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.068][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.070][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.074][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.074][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.076][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.080][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.080][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.082][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.086][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.086][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.088][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.092][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:41.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:41.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.094][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:41.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:41.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.098][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:41.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:41.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.100][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:41.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:41.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.104][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:41.105][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:41.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.106][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:41.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:41.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.117][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:41.117][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:41.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.120][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:41.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:41.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.123][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:41.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:41.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.125][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.129][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.129][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.131][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.135][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.136][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.137][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.141][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:41.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.150][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:41.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:41.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.176][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:41.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:41.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:41.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:41.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:41.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:41.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:41.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:41.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:41.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:41.219][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.220][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.225][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.226][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.228][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.232][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.232][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.234][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.238][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.239][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.240][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.244][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.245][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.246][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.250][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.251][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.258][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.262][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:41.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:41.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.264][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.265][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:41.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:41.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.268][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:41.269][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:41.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.270][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.271][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:41.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:41.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:41.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.276][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:41.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:41.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.280][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.282][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.286][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:41.286][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:41.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.288][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:41.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:41.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.292][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:41.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:41.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.298][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.298][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.304][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.304][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.306][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.310][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:41.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:41.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.327][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:41.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:41.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:41.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:41.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:41.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:41.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:41.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:41.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:41.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:41.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:41.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:41.388][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.390][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.394][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.395][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.396][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.400][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.401][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.402][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.406][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.407][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.408][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.412][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.413][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.415][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.419][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.419][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.421][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.425][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:41.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:41.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.427][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.428][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:41.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:41.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.431][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:41.432][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:41.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.433][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:41.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:41.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:41.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:41.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:41.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:41.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.449][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:41.450][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:41.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.452][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.453][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:41.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:41.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.456][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:41.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:41.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.458][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:41.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:41.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.462][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.462][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.464][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:41.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.468][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.469][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.470][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:41.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:41.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:41.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:41.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.492][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:41.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.506][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:41.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:41.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.515][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:41.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:41.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:41.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:41.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:41.574][self$createEntryFromContent] Accession numbers: 172391226, 172389755, 172389592.
biodb.DEBUG[2024-11-16 16:14:41.575][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:41.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:41.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:41.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:41.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:41.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:41.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:41.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:41.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.592][private$selectFields]
biodb.TRACE[2024-11-16 16:14:41.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:41.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:41.594][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.595][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.598][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.599][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.601][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.602][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.602][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.603][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.604][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.605][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.606][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172391226].
biodb.DEBUG[2024-11-16 16:14:41.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:41.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:41.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:41.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:41.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:41.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:41.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:41.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.632][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.633][private$selectFields]
biodb.TRACE[2024-11-16 16:14:41.634][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:41.634][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:41.635][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.637][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.638][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.640][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.642][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.643][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.647][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.647][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:41.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.658][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389755].
biodb.DEBUG[2024-11-16 16:14:41.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:41.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:41.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:41.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:41.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:41.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:41.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.673][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.674][private$selectFields]
biodb.TRACE[2024-11-16 16:14:41.675][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:41.675][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:41.676][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.679][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.680][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.680][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.682][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.683][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.683][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:41.684][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.687][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:41.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:41.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:41.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:41.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389592].
biodb.DEBUG[2024-11-16 16:14:41.698][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:41.699][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:41.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:41.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:41.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:41.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:41.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:41.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:41.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:41.713][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:41.716][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:41.717][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:41.718][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:41.805][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:41.806][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:41.808][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:41.809][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:41.874][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:41.876][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-11-16 16:14:41.879][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-11-16 16:14:41.881][private$loadEntries] Creating entries from ids [3]: "172416872, 172416854, 172416852".
biodb.DEBUG[2024-11-16 16:14:41.882][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-16 16:14:41.883][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172416872, 172416854, 172416852".
biodb.TRACE[2024-11-16 16:14:41.884][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-16 16:14:41.885][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:41.886][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:41.887][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:41.887][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:41.888][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-16 16:14:41.908][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-16 16:14:41.909][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172416872,172416854,172416852/XML".
biodb.DEBUG[2024-11-16 16:14:41.911][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:41.912][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:41.913][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172416872,172416854,172416852/XML".
biodb.TRACE[2024-11-16 16:14:42.001][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172416872,172416854,172416852/XML).
biodb.TRACE[2024-11-16 16:14:42.176][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416872.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416854.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416852.xml"
biodb.DEBUG[2024-11-16 16:14:42.178][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:42.179][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-16 16:14:42.180][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:42.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:42.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:42.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:42.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:42.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:42.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:42.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:42.191][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.192][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.193][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.197][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.198][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.200][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.204][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.205][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.206][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.210][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.211][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.213][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.216][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.217][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.219][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.222][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.223][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.224][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.229][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:42.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:42.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.231][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.232][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:42.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:42.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.235][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:42.236][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:42.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.237][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:42.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:42.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:42.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:42.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.244][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:42.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:42.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.250][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.254][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:42.254][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:42.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.257][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:42.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:42.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.260][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:42.260][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.266][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.266][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.272][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.273][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.274][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.278][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:42.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:42.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.295][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:42.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.304][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:42.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.312][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:42.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:42.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:42.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:42.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:42.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:42.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:42.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:42.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:42.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:42.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:42.355][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.357][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.361][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.362][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.363][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.367][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.368][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.370][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.373][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.374][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.376][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.379][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.380][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.382][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.386][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.386][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.388][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.392][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:42.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:42.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.394][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:42.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.441][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:42.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:42.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:42.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:42.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:42.449][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:42.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.450][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:42.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:42.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.456][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.460][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:42.461][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:42.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.462][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.463][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:42.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:42.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.467][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:42.467][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.469][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:42.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.473][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.474][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.475][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.476][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.479][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.480][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.485][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:42.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:42.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:42.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.511][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.520][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:42.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:42.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:42.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:42.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:42.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:42.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:42.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:42.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:42.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:42.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:42.564][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.566][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.571][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.572][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.573][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.577][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.578][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.583][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.584][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.585][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.589][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.590][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.595][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.596][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.598][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.602][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:42.602][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:42.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.604][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.605][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:42.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.608][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:42.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:42.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:42.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:42.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:42.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:42.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.616][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:42.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:42.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.620][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.622][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:42.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.626][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:42.627][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:42.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.628][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:42.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.632][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:42.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.634][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.638][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.639][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:42.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.645][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.646][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.647][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.652][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.662][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.681][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:42.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:42.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:42.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:42.757][self$createEntryFromContent] Accession numbers: 172416872, 172416854, 172416852.
biodb.DEBUG[2024-11-16 16:14:42.757][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:42.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:42.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:42.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:42.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:42.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:42.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:42.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:42.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.774][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.774][private$selectFields]
biodb.TRACE[2024-11-16 16:14:42.775][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:42.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:42.776][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.777][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.778][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.779][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.782][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.784][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.787][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:42.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-11-16 16:14:42.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:42.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:42.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:42.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:42.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:42.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:42.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.813][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.813][private$selectFields]
biodb.TRACE[2024-11-16 16:14:42.814][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:42.815][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:42.816][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.817][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.819][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.820][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.820][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.822][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.823][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.823][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.826][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.827][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.837][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-11-16 16:14:42.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:42.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:42.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:42.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:42.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:42.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:42.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:42.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.853][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.853][private$selectFields]
biodb.TRACE[2024-11-16 16:14:42.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:42.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:42.855][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.858][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.859][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.860][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.861][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.862][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.863][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:42.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.865][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.866][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:42.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.876][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416852].
biodb.DEBUG[2024-11-16 16:14:42.877][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:42.878][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-16 16:14:42.885][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:42.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:42.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:42.894][biodb::testThat]
biodb.INFO [2024-11-16 16:14:42.895][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-11-16 16:14:42.895][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:42.896][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:42.898][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-16 16:14:42.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-16 16:14:42.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.901][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-16 16:14:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-16 16:14:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:42.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:42.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:42.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:42.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:42.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:42.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:42.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:42.943][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:42.945][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:42.946][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-11-16 16:14:42.947][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:42.949][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-11-16 16:14:42.950][private$loadEntries] Creating entries from ids [2]: "172346151, 172345958".
biodb.DEBUG[2024-11-16 16:14:42.951][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-16 16:14:42.952][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172346151, 172345958".
biodb.TRACE[2024-11-16 16:14:42.953][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-11-16 16:14:42.956][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172346151.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172345958.xml".
biodb.DEBUG[2024-11-16 16:14:42.956][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:42.957][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-11-16 16:14:42.958][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:42.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:42.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:42.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:42.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:42.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:42.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:42.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:42.974][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.977][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:42.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:42.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.981][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.982][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.983][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:42.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.987][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.988][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.989][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:42.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.993][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.994][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.996][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:42.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:42.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.000][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.001][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.006][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.007][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.009][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.013][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:43.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:43.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.015][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.016][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:43.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:43.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.019][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:43.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:43.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:43.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:43.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.025][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:43.025][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:43.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.030][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:43.031][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:43.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.032][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:43.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.036][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:43.037][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:43.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.040][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:43.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:43.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.043][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:43.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:43.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.045][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:43.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:43.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.049][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:43.050][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:43.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.051][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:43.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:43.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.055][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:43.056][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:43.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.057][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:43.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:43.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.061][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:43.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.070][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:43.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.088][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:43.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.096][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:43.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:43.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:43.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:43.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:43.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:43.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:43.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:43.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:43.137][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.139][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.143][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.144][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.145][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.149][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.150][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.151][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.155][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.156][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.157][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.161][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.162][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.163][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.167][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.168][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.169][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.173][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:43.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:43.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.175][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.176][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:43.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:43.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.179][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:43.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:43.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.181][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:43.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:43.186][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:43.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:43.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:43.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:43.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.193][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:43.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:43.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.197][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:43.198][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:43.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.200][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:43.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:43.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.203][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:43.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:43.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.205][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:43.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.209][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:43.210][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:43.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.211][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:43.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:43.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.215][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:43.216][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:43.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.217][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:43.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:43.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.221][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:43.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.236][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:43.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:43.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.253][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.262][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:43.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:43.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:43.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:43.311][self$createEntryFromContent] Accession numbers: 172346151, 172345958.
biodb.DEBUG[2024-11-16 16:14:43.312][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:43.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:43.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:43.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:43.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:43.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:43.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:43.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:43.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.351][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.352][private$selectFields]
biodb.TRACE[2024-11-16 16:14:43.353][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:43.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:43.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.357][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.358][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.359][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.360][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.361][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.369][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.370][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.370][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.372][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.373][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:43.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-11-16 16:14:43.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:43.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:43.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:43.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:43.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:43.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:43.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:43.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.399][private$selectFields]
biodb.TRACE[2024-11-16 16:14:43.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:43.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:43.401][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.404][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.405][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.407][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.408][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.409][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.410][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.412][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.412][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:43.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.422][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172346151].
biodb.DEBUG[2024-11-16 16:14:43.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:43.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:43.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:43.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:43.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:43.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:43.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:43.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.438][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.439][private$selectFields]
biodb.TRACE[2024-11-16 16:14:43.439][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:43.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:43.441][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.443][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.444][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.445][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.446][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.447][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.448][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:43.448][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.449][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.451][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.451][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:43.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:43.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.461][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172345958].
biodb.DEBUG[2024-11-16 16:14:43.462][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:43.462][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:43.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:43.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:43.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:43.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:43.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:43.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:43.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:43.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:43.484][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:43.485][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:43.486][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:43.541][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:43.542][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:43.543][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:43.544][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:43.613][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:43.615][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-11-16 16:14:43.618][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-11-16 16:14:43.621][private$loadEntries] Creating entries from ids [3]: "172415476, 172413321, 172413312".
biodb.DEBUG[2024-11-16 16:14:43.622][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-16 16:14:43.623][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172415476, 172413321, 172413312".
biodb.TRACE[2024-11-16 16:14:43.624][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-16 16:14:43.625][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:43.626][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:43.627][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:43.627][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:43.628][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-16 16:14:43.629][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-16 16:14:43.631][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321,172413312/XML".
biodb.DEBUG[2024-11-16 16:14:43.632][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:43.633][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:43.634][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321,172413312/XML".
biodb.TRACE[2024-11-16 16:14:43.721][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172415476,172413321,172413312/XML).
biodb.TRACE[2024-11-16 16:14:43.928][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172415476.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172413321.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172413312.xml"
biodb.DEBUG[2024-11-16 16:14:43.931][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:43.932][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-16 16:14:43.933][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:43.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:43.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:43.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:43.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:43.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:43.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:43.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:43.944][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.945][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:43.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:43.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.950][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.951][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.952][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:43.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.956][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.957][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.958][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:43.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.962][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.963][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:43.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.969][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.969][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.971][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:43.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.975][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.975][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.977][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:43.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.981][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:43.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:43.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.984][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.985][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.988][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:43.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:43.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.990][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:43.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:43.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:43.995][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:43.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:43.996][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:43.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:43.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:43.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.001][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.003][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.007][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:44.008][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:44.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.009][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.010][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:44.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:44.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.013][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:44.014][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:44.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.015][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:44.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:44.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.020][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.020][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.022][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.026][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.027][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.029][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.033][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:44.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.042][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.059][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.068][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:44.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:44.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:44.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:44.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:44.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:44.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:44.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:44.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:44.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:44.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:44.111][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.113][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.117][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.117][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.123][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.124][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.125][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.129][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.130][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.131][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.135][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.136][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.137][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.141][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.142][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.143][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.147][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:44.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.154][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:44.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.164][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:44.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:44.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.166][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:44.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:44.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:44.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:44.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.172][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:44.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:44.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.176][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.177][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.179][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.183][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:44.184][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:44.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.186][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:44.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:44.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.189][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:44.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:44.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.192][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:44.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:44.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.196][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.196][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.198][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.202][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.203][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.204][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:44.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.217][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:44.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.226][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:44.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.234][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:44.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:44.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:44.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:44.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:44.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:44.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:44.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:44.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:44.287][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.289][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.293][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.294][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.296][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.300][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.300][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.302][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.306][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.307][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.312][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.313][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.314][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.318][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.319][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.321][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.325][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:44.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.327][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.328][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:44.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.331][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:44.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:44.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.333][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:44.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:44.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.337][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:44.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:44.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.340][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:44.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.344][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.345][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.346][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.350][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:44.351][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:44.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.352][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:44.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:44.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.357][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:44.358][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:44.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:44.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.364][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.364][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.366][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.370][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.370][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.372][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.376][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.384][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:44.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.393][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:44.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.402][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:44.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.411][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:44.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:44.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:44.476][self$createEntryFromContent] Accession numbers: 172415476, 172413321, 172413312.
biodb.DEBUG[2024-11-16 16:14:44.477][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:44.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:44.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:44.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:44.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:44.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:44.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:44.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:44.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.493][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.494][private$selectFields]
biodb.TRACE[2024-11-16 16:14:44.494][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:44.495][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:44.496][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.496][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.497][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.498][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.499][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.500][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.501][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.502][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.503][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.504][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.504][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.506][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:44.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.516][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172415476].
biodb.DEBUG[2024-11-16 16:14:44.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:44.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:44.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:44.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:44.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:44.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:44.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:44.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.532][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.533][private$selectFields]
biodb.TRACE[2024-11-16 16:14:44.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:44.534][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:44.535][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.538][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.541][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.542][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.542][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.543][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.544][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.545][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.546][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:44.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172413321].
biodb.DEBUG[2024-11-16 16:14:44.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:44.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:44.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:44.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:44.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:44.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:44.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:44.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.571][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.572][private$selectFields]
biodb.TRACE[2024-11-16 16:14:44.572][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:44.573][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:44.574][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.577][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.578][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.580][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.580][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.581][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:44.582][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.584][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.584][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:44.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172413312].
biodb.DEBUG[2024-11-16 16:14:44.595][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:44.595][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-16 16:14:44.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:44.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:44.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:44.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:44.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:44.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:44.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:44.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:44.641][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:44.644][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:44.645][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-11-16 16:14:44.646][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:44.648][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-11-16 16:14:44.649][private$loadEntries] Creating entries from ids [2]: "172385817, 172384230".
biodb.DEBUG[2024-11-16 16:14:44.650][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-16 16:14:44.651][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172385817, 172384230".
biodb.TRACE[2024-11-16 16:14:44.652][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-11-16 16:14:44.654][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172385817.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172384230.xml".
biodb.DEBUG[2024-11-16 16:14:44.655][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:44.656][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-11-16 16:14:44.657][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:44.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:44.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:44.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:44.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:44.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:44.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:44.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:44.668][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.670][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.674][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.675][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.676][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.680][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.686][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.688][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.692][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.693][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.694][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.699][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.699][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.701][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.705][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.706][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.707][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.711][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:44.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.713][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.714][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.717][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:44.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:44.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:44.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.724][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:44.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:44.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.726][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:44.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:44.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.730][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.730][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.736][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:44.736][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:44.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.738][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.739][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:44.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:44.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.741][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:44.742][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:44.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.743][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:44.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:44.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.747][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.748][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.753][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.754][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.755][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.759][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:44.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.768][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.777][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:44.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.786][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:44.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.795][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:44.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:44.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:44.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:44.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:44.827][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:44.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:44.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:44.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:44.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:44.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:44.837][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.839][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.843][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.844][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.845][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.849][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.850][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.851][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.855][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.856][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.857][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.861][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.862][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.863][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.867][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.868][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.869][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.873][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:44.874][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.875][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.876][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:44.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:44.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.879][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:44.880][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:44.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.881][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:44.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:44.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.888][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:44.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:44.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.892][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.894][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.898][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:44.898][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:44.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.900][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.904][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:44.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:44.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:44.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.910][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.911][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:44.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.916][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.917][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.918][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:44.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:44.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.931][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:44.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:44.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.946][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:44.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:44.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.955][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:44.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.964][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:44.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:44.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:44.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:44.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:44.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:44.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:44.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:44.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:45.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:45.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:45.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:45.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:45.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:45.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:45.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:45.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:45.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:45.013][self$createEntryFromContent] Accession numbers: 172385817, 172384230.
biodb.DEBUG[2024-11-16 16:14:45.014][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:45.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.031][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.032][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.032][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.034][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.037][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.038][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.040][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.040][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.041][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.044][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.045][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.055][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172391226].
biodb.DEBUG[2024-11-16 16:14:45.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.071][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.072][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.075][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.077][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.078][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.080][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.081][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.081][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.083][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.085][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.086][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172385817].
biodb.DEBUG[2024-11-16 16:14:45.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.112][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.113][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.115][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.118][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.119][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.120][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.122][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.123][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.124][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.125][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.127][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172384230].
biodb.DEBUG[2024-11-16 16:14:45.138][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:45.139][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:45.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:45.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:45.156][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:45.157][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:45.159][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:45.215][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:45.216][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:45.217][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:45.218][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:45.303][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:45.304][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-11-16 16:14:45.308][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-11-16 16:14:45.309][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:45.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.326][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.327][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.327][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.328][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.329][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.330][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.332][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.333][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.335][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.335][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.336][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.337][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.338][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.339][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.340][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.357][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-11-16 16:14:45.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.373][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.374][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.374][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.375][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.376][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.377][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.380][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.383][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.385][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.386][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.387][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.388][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.389][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.399][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-11-16 16:14:45.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.417][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.418][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.419][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.419][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.420][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.421][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.423][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.426][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.428][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.429][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.431][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.432][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416852].
biodb.DEBUG[2024-11-16 16:14:45.443][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:45.444][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-16 16:14:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.455][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:45.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:45.462][biodb::testThat]
biodb.INFO [2024-11-16 16:14:45.463][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-11-16 16:14:45.463][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:45.464][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:45.466][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-16 16:14:45.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-16 16:14:45.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.469][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-16 16:14:45.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-16 16:14:45.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:45.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:45.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:45.515][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:45.517][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:45.518][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-16 16:14:45.519][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:45.520][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-16 16:14:45.521][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:45.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.538][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.538][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.539][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.540][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.540][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.541][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.542][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.543][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.544][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.545][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.546][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.547][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.547][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.548][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.550][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.550][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394306].
biodb.DEBUG[2024-11-16 16:14:45.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.576][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.576][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.579][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.583][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.584][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.586][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.587][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.590][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.591][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-11-16 16:14:45.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.618][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.619][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.620][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.621][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.621][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.634][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.635][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.636][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.637][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.638][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.639][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.649][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172393920].
biodb.DEBUG[2024-11-16 16:14:45.650][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:45.650][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:45.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:45.666][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:45.668][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:45.669][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-11-16 16:14:45.670][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:45.671][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-11-16 16:14:45.673][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:45.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.689][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.690][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.691][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.691][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.692][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.693][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.694][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.695][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.696][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.697][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.698][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.699][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.700][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.701][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.703][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.703][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-11-16 16:14:45.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.730][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.731][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.732][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.733][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.735][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.736][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.737][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.738][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.739][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.740][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.740][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.741][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.742][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.743][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.753][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-11-16 16:14:45.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.770][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.770][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.771][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.772][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.773][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.776][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.779][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.779][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.780][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.784][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.784][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416818].
biodb.DEBUG[2024-11-16 16:14:45.796][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:45.797][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-16 16:14:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:45.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:45.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:45.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:45.860][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:45.861][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-16 16:14:45.862][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:45.863][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-16 16:14:45.865][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:45.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.882][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.883][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.884][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.885][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.886][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.889][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.889][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.890][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.892][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.893][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.893][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.894][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.895][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.896][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.897][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.914][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172391226].
biodb.DEBUG[2024-11-16 16:14:45.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.930][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.931][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.936][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.937][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.938][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.940][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.941][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.944][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.945][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389755].
biodb.DEBUG[2024-11-16 16:14:45.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:45.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:45.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:45.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:45.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.972][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.973][private$selectFields]
biodb.TRACE[2024-11-16 16:14:45.973][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:45.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:45.975][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.977][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.980][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.981][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.982][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:45.982][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.984][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.985][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:45.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:45.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:45.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:45.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389592].
biodb.DEBUG[2024-11-16 16:14:45.996][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:45.996][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:45.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:45.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:45.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:46.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:46.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:46.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:46.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:46.011][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:46.014][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:46.015][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-11-16 16:14:46.015][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:46.016][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-11-16 16:14:46.018][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:46.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:46.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:46.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:46.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:46.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:46.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:46.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.034][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.034][private$selectFields]
biodb.TRACE[2024-11-16 16:14:46.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:46.036][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:46.036][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.037][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.038][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.040][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.041][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.042][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.043][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.044][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.045][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.045][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.047][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.047][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:46.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.057][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-11-16 16:14:46.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:46.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:46.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:46.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:46.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:46.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:46.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:46.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.073][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.074][private$selectFields]
biodb.TRACE[2024-11-16 16:14:46.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:46.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:46.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.076][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.078][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.081][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.082][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.083][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.086][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-11-16 16:14:46.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:46.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:46.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:46.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:46.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:46.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:46.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:46.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.112][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.112][private$selectFields]
biodb.TRACE[2024-11-16 16:14:46.113][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:46.114][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:46.114][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.117][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.118][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.120][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.121][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.122][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:46.122][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.123][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.124][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.125][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:46.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.135][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416852].
biodb.DEBUG[2024-11-16 16:14:46.135][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:46.136][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-16 16:14:46.153][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:46.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:46.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:46.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:46.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.163][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:46.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:46.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.165][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.166][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.168][ef$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:46.169][biodb::testThat]
biodb.INFO [2024-11-16 16:14:46.170][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-11-16 16:14:46.170][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:46.171][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:46.173][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-16 16:14:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-16 16:14:46.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.182][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-16 16:14:46.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-16 16:14:46.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:46.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:46.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:46.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:46.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:46.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:46.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:46.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:46.224][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:46.226][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:46.227][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:46.228][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:46.283][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:46.284][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:46.285][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:46.286][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:46.354][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:46.356][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-11-16 16:14:46.359][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-11-16 16:14:46.360][private$loadEntries] Creating entries from ids [3]: "172417154, 172417118, 172416756".
biodb.DEBUG[2024-11-16 16:14:46.361][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-16 16:14:46.363][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172417154, 172417118, 172416756".
biodb.TRACE[2024-11-16 16:14:46.363][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-16 16:14:46.364][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:46.365][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:46.366][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:46.367][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:46.367][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-16 16:14:46.368][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-16 16:14:46.370][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417154,172417118,172416756/XML".
biodb.DEBUG[2024-11-16 16:14:46.371][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:46.372][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:46.373][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417154,172417118,172416756/XML".
biodb.TRACE[2024-11-16 16:14:46.460][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417154,172417118,172416756/XML).
biodb.TRACE[2024-11-16 16:14:46.677][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417154.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417118.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416756.xml"
biodb.DEBUG[2024-11-16 16:14:46.680][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:46.681][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-16 16:14:46.682][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:46.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:46.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:46.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:46.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:46.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:46.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:46.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:46.694][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:46.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:46.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.696][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:46.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.701][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.701][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.703][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.707][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.708][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.709][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.714][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.715][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.720][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.721][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.722][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.726][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.727][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.728][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.732][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:46.733][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:46.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.735][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.736][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.739][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:46.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:46.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.741][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:46.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:46.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:46.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:46.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.747][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:46.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:46.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:46.752][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:46.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.753][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:46.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:46.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.757][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:46.758][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:46.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.759][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.760][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:46.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:46.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.763][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:46.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.765][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:46.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.769][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:46.770][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:46.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.771][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:46.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:46.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.775][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:46.776][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:46.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.778][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:46.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:46.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.781][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:46.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.790][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:46.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.799][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:46.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.808][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:46.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.817][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:46.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:46.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:46.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:46.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:46.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:46.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:46.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:46.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:46.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:46.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:46.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:46.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:46.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:46.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:46.861][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:46.862][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:46.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.872][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:46.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:46.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.878][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.878][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.880][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.884][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.885][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.887][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.891][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.892][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.893][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.897][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.898][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.899][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.903][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.904][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.910][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:46.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:46.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:46.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.916][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:46.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:46.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.918][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:46.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.922][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:46.923][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:46.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.924][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:46.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:46.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.930][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.934][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:46.935][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:46.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.936][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.937][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:46.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.940][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:46.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.942][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:46.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:46.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.946][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:46.947][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:46.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.948][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:46.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:46.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.952][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:46.953][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:46.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.954][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:46.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:46.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.959][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:46.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.968][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:46.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:46.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.977][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:46.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.987][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:46.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:46.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:46.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:46.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:47.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.039][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.042][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.046][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:47.046][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:47.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.048][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:47.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.052][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.052][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.054][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.058][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:47.059][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:47.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.060][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:47.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:47.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.065][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:47.066][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:47.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.067][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:47.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:47.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.072][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:47.072][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:47.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.074][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:47.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:47.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.078][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:47.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:47.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.081][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:47.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.085][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:47.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:47.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.087][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:47.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:47.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:47.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:47.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.093][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:47.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.098][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:47.098][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:47.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.100][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:47.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:47.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.104][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:47.105][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:47.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.106][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.107][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.110][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:47.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:47.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.113][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:47.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:47.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.117][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:47.118][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:47.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.120][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:47.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:47.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.123][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:47.124][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:47.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.130][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:47.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:47.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:47.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:47.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:47.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:47.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.146][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:47.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:47.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:47.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:47.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:47.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:47.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.155][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:47.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:47.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:47.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:47.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:47.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:47.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:47.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.173][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:47.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:47.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:47.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:47.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:47.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:47.233][self$createEntryFromContent] Accession numbers: 172417154, 172417118, 172416756.
biodb.DEBUG[2024-11-16 16:14:47.234][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:47.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.252][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.252][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.253][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.254][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.255][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.257][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.260][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.262][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.263][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.265][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.266][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.276][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417154].
biodb.DEBUG[2024-11-16 16:14:47.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.292][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.293][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.294][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.295][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.295][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.298][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.299][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.300][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.301][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.302][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.303][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.305][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.306][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-11-16 16:14:47.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.333][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.334][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.335][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.335][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.339][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.341][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.342][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.343][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.346][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.347][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.356][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416756].
biodb.DEBUG[2024-11-16 16:14:47.357][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:47.358][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:47.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:47.372][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:47.375][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:47.376][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:47.377][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:47.431][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:47.432][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:47.433][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:47.434][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:47.511][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:47.512][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-11-16 16:14:47.515][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-11-16 16:14:47.517][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:47.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.541][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.542][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.542][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.543][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.544][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.545][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.545][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.547][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.550][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.551][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.552][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.552][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.553][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.555][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.556][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.566][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-11-16 16:14:47.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.582][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.583][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.585][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.588][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.591][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.592][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.593][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.596][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-11-16 16:14:47.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.622][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.623][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.624][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.625][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.625][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.627][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.629][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.630][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.632][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.633][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.634][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.637][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.637][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416818].
biodb.DEBUG[2024-11-16 16:14:47.649][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:47.649][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:47.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:47.681][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:47.684][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:47.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-16 16:14:47.686][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:47.687][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-16 16:14:47.688][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:47.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.704][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.705][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.707][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.709][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.710][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.711][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.713][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.714][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.717][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.718][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.727][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394306].
biodb.DEBUG[2024-11-16 16:14:47.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.743][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.744][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.744][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.745][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.746][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.747][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.747][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.752][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.752][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.753][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.757][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-11-16 16:14:47.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.783][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.784][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.785][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.785][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.786][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.787][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.788][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.791][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.792][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.793][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.795][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.796][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172393920].
biodb.DEBUG[2024-11-16 16:14:47.814][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:47.815][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:47.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:47.830][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:47.832][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:47.833][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-11-16 16:14:47.834][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:47.835][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-11-16 16:14:47.837][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:47.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.853][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.854][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.855][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.856][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.859][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.859][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.860][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.862][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.863][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.863][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.864][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.866][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.867][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-11-16 16:14:47.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.893][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.893][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.894][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.895][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.895][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.897][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.898][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.901][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.902][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.903][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.906][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.916][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-11-16 16:14:47.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.932][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.933][private$selectFields]
biodb.TRACE[2024-11-16 16:14:47.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:47.934][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:47.935][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.936][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.938][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.939][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.941][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.941][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.942][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:47.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.945][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.946][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:47.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:47.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:47.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416818].
biodb.DEBUG[2024-11-16 16:14:47.957][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:47.957][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:47.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:47.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:47.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:47.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:47.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:47.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:47.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:47.988][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:47.991][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:47.991][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:47.993][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:48.048][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:48.049][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:48.050][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:48.051][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:48.120][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:48.122][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-11-16 16:14:48.125][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-11-16 16:14:48.126][private$loadEntries] Creating entries from ids [2]: "172417440, 172417354".
biodb.DEBUG[2024-11-16 16:14:48.127][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-16 16:14:48.128][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172417440, 172417354".
biodb.TRACE[2024-11-16 16:14:48.129][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-11-16 16:14:48.130][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:48.131][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:48.132][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:48.132][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:48.133][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-16 16:14:48.134][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-16 16:14:48.135][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417440,172417354/XML".
biodb.DEBUG[2024-11-16 16:14:48.137][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:48.138][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:48.139][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417440,172417354/XML".
biodb.TRACE[2024-11-16 16:14:48.273][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417440,172417354/XML).
biodb.TRACE[2024-11-16 16:14:48.422][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417440.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417354.xml"
biodb.DEBUG[2024-11-16 16:14:48.424][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:48.425][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-11-16 16:14:48.425][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:48.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:48.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:48.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:48.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:48.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:48.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:48.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:48.437][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.444][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.445][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.446][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.450][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.451][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.453][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.457][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.458][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.459][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.464][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.464][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.466][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.470][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.471][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.472][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.486][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:48.487][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:48.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.490][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:48.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:48.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.493][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:48.494][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:48.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.495][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:48.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:48.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.499][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:48.500][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:48.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.502][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:48.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:48.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:48.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.508][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:48.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:48.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.512][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:48.513][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:48.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.514][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.515][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:48.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:48.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.518][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:48.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:48.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.521][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:48.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:48.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.525][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:48.525][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:48.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.527][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:48.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:48.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.531][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:48.532][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:48.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:48.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:48.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.537][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:48.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.546][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:48.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.554][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:48.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.563][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.572][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:48.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:48.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:48.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:48.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:48.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:48.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:48.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:48.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:48.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:48.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:48.615][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.617][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.622][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.622][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.628][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.629][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.634][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.635][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.637][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.641][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.642][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.647][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.648][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.653][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:48.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:48.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.656][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.657][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:48.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:48.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.660][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:48.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:48.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.662][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:48.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:48.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:48.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:48.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:48.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.674][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:48.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:48.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.678][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:48.679][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:48.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.680][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.681][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:48.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:48.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.685][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:48.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:48.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.687][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:48.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:48.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.691][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:48.691][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:48.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.693][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:48.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:48.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.697][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:48.698][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:48.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.699][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:48.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:48.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:48.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.712][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:48.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:48.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.721][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:48.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:48.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.729][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.744][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:48.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:48.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:48.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:48.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:48.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:48.794][self$createEntryFromContent] Accession numbers: 172417440, 172417354.
biodb.DEBUG[2024-11-16 16:14:48.795][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:48.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:48.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:48.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:48.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:48.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:48.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:48.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:48.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.811][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.812][private$selectFields]
biodb.TRACE[2024-11-16 16:14:48.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:48.813][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:48.814][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.815][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.817][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.818][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.818][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.820][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.820][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.821][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.822][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.823][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.824][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.825][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:48.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.835][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-11-16 16:14:48.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:48.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:48.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:48.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:48.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:48.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:48.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:48.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.850][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.851][private$selectFields]
biodb.TRACE[2024-11-16 16:14:48.852][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:48.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:48.853][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.854][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.855][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.856][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.859][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.860][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.860][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.861][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.863][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.864][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:48.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.874][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417354].
biodb.DEBUG[2024-11-16 16:14:48.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:48.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:48.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:48.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:48.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:48.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:48.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:48.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.889][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.890][private$selectFields]
biodb.TRACE[2024-11-16 16:14:48.890][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:48.891][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:48.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.893][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.893][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.895][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.897][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.898][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.899][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:48.900][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.902][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.902][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:48.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:48.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:48.912][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-11-16 16:14:48.913][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:48.913][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:48.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:48.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:48.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:48.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:48.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:48.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:48.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:48.928][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:48.930][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:48.931][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:48.933][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:48.987][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:48.988][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:48.990][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:48.991][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:49.058][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:49.059][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-11-16 16:14:49.063][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-11-16 16:14:49.065][private$loadEntries] Creating entries from ids [1]: "172417275".
biodb.DEBUG[2024-11-16 16:14:49.066][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-16 16:14:49.067][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172417275".
biodb.TRACE[2024-11-16 16:14:49.068][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-16 16:14:49.068][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:49.069][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:49.070][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:49.071][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:49.071][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-16 16:14:49.072][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-16 16:14:49.074][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417275/XML".
biodb.DEBUG[2024-11-16 16:14:49.075][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:49.076][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:49.077][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417275/XML".
biodb.TRACE[2024-11-16 16:14:49.149][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417275/XML).
biodb.TRACE[2024-11-16 16:14:49.272][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417275.xml"
biodb.DEBUG[2024-11-16 16:14:49.274][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:49.275][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:49.276][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:49.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.287][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:49.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:49.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.289][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:49.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:49.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.293][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:49.294][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:49.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:49.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:49.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.299][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:49.300][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:49.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.302][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:49.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:49.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.306][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:49.306][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:49.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:49.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:49.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.322][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:49.323][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:49.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.324][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.328][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:49.329][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:49.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.330][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:49.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:49.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.334][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:49.335][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:49.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.336][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.337][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.340][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:49.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:49.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:49.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:49.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:49.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:49.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:49.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:49.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:49.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:49.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.355][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:49.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:49.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.359][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:49.360][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:49.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.362][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.363][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:49.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:49.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.366][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:49.367][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:49.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.368][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:49.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:49.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.372][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:49.373][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:49.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.374][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:49.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.378][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:49.379][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:49.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.380][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:49.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.384][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:49.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:49.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:49.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:49.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:49.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:49.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.393][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:49.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:49.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:49.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:49.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:49.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:49.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:49.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:49.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:49.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:49.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.411][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:49.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:49.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:49.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:49.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:49.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:49.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.420][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:49.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:49.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:49.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:49.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:49.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:49.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:49.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:49.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:49.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:49.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:49.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:49.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:49.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:49.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:49.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:49.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:49.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:49.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:49.461][self$createEntryFromContent] Accession numbers: 172417275.
biodb.DEBUG[2024-11-16 16:14:49.461][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:49.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.477][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.478][private$selectFields]
biodb.TRACE[2024-11-16 16:14:49.479][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:49.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:49.480][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.485][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.486][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.487][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.488][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.490][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.491][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:49.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.501][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417275].
biodb.DEBUG[2024-11-16 16:14:49.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.517][private$selectFields]
biodb.TRACE[2024-11-16 16:14:49.518][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:49.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:49.519][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.522][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.524][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.525][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.526][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.529][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.530][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:49.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.540][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-11-16 16:14:49.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.555][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.556][private$selectFields]
biodb.TRACE[2024-11-16 16:14:49.557][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:49.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:49.558][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.559][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.561][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.562][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.563][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.565][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.566][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.574][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.575][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:49.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.585][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-11-16 16:14:49.586][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:49.586][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:49.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:49.619][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:49.621][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:49.622][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-11-16 16:14:49.623][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:49.624][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-11-16 16:14:49.625][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:49.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.641][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.642][private$selectFields]
biodb.TRACE[2024-11-16 16:14:49.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:49.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:49.644][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.647][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.648][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.650][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.651][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.653][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.654][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:49.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.664][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417154].
biodb.DEBUG[2024-11-16 16:14:49.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.680][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.680][private$selectFields]
biodb.TRACE[2024-11-16 16:14:49.681][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:49.682][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:49.683][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.684][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.686][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.687][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.688][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.689][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.690][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.691][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.693][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.694][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.703][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-11-16 16:14:49.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.719][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.719][private$selectFields]
biodb.TRACE[2024-11-16 16:14:49.720][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:49.721][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:49.721][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.722][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.724][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.727][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.728][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.729][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.729][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.730][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.731][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.732][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.742][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416756].
biodb.DEBUG[2024-11-16 16:14:49.743][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:49.743][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:49.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:49.758][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:49.761][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:49.762][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-11-16 16:14:49.763][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:49.764][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-11-16 16:14:49.765][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:49.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.780][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.781][private$selectFields]
biodb.TRACE[2024-11-16 16:14:49.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:49.782][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:49.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.788][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.789][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.790][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.792][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.793][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.794][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:49.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.804][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-11-16 16:14:49.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.820][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.820][private$selectFields]
biodb.TRACE[2024-11-16 16:14:49.821][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:49.822][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:49.822][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.823][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.824][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.825][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.826][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.827][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.828][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.830][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.832][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.833][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:49.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-11-16 16:14:49.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.871][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.872][private$selectFields]
biodb.TRACE[2024-11-16 16:14:49.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:49.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:49.874][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.875][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.877][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.878][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.878][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.880][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.880][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.881][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.882][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.883][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.884][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.885][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:49.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.895][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416818].
biodb.DEBUG[2024-11-16 16:14:49.895][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:49.896][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:49.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:49.927][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:49.929][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:49.930][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-16 16:14:49.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:49.932][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-16 16:14:49.934][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:49.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.950][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.950][private$selectFields]
biodb.TRACE[2024-11-16 16:14:49.951][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:49.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:49.953][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.955][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.956][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.958][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.959][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.960][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.961][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.963][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.963][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:49.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394306].
biodb.DEBUG[2024-11-16 16:14:49.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:49.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:49.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:49.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:49.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:49.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:49.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:49.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.989][private$selectFields]
biodb.TRACE[2024-11-16 16:14:49.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:49.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:49.992][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.992][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.994][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.995][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.996][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:49.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:49.997][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:49.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:49.999][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.002][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-11-16 16:14:50.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.028][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.029][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.029][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.030][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.031][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.032][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.034][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.037][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.037][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.038][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.041][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.042][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172393920].
biodb.DEBUG[2024-11-16 16:14:50.052][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:50.053][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:50.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:50.067][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:50.069][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:50.071][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-11-16 16:14:50.071][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:50.072][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-11-16 16:14:50.074][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:50.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.090][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.091][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.093][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.094][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.096][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.099][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.099][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.100][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.102][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.103][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.104][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-11-16 16:14:50.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.136][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.137][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.137][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.138][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.139][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.140][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.143][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.145][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.145][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.146][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.147][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.148][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.149][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.150][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.160][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416819].
biodb.DEBUG[2024-11-16 16:14:50.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.175][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.175][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.177][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.178][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.179][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.180][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.181][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.182][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.183][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.184][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.184][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.185][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.186][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.188][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.198][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416818].
biodb.DEBUG[2024-11-16 16:14:50.199][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:50.199][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:50.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:50.229][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:50.231][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:50.232][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-11-16 16:14:50.233][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:50.234][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-11-16 16:14:50.236][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:50.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.251][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.252][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.253][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.253][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.254][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.255][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.259][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.260][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.261][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.263][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.264][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.274][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-11-16 16:14:50.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.290][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.290][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.292][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.298][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.299][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.302][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.303][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417354].
biodb.DEBUG[2024-11-16 16:14:50.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.329][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.329][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.331][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.333][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.334][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.338][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.339][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.339][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.342][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.352][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417118].
biodb.DEBUG[2024-11-16 16:14:50.353][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:50.353][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:50.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:50.368][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:50.370][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:50.371][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-11-16 16:14:50.377][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:50.379][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-11-16 16:14:50.380][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:50.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.397][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.397][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.398][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.399][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.399][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.400][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.401][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.402][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.403][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.404][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.405][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.406][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.407][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.408][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.408][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.410][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.410][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.420][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417275].
biodb.DEBUG[2024-11-16 16:14:50.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.437][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.438][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.439][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.442][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.445][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.446][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.449][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.449][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-11-16 16:14:50.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.476][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.478][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.484][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.485][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.486][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.488][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.489][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.498][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416823].
biodb.DEBUG[2024-11-16 16:14:50.499][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:50.500][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-16 16:14:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:50.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:50.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:50.555][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:50.557][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:50.558][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:50.559][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:50.615][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:50.616][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:50.617][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:50.618][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:50.685][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:50.687][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-11-16 16:14:50.690][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-11-16 16:14:50.692][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:50.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.708][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.709][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.710][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.711][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.712][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.712][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.714][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.717][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.718][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.718][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.719][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.720][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.721][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.722][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-11-16 16:14:50.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.748][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.749][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.749][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.750][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.751][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.751][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.752][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.754][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.757][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.758][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.759][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.768][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.769][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.780][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417354].
biodb.DEBUG[2024-11-16 16:14:50.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:50.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.796][private$selectFields]
biodb.TRACE[2024-11-16 16:14:50.797][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:50.798][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:50.799][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.802][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.804][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.806][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:50.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.809][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.810][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:50.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:50.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:50.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:50.819][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417154].
biodb.DEBUG[2024-11-16 16:14:50.820][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:50.820][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:50.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:50.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:50.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:50.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:50.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:50.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:50.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:50.835][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:50.837][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:50.838][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:50.839][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:50.894][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:50.895][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:50.896][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:50.897][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:50.964][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:50.965][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-11-16 16:14:50.969][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-11-16 16:14:50.971][private$loadEntries] Creating entries from ids [1]: "172417240".
biodb.DEBUG[2024-11-16 16:14:50.972][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-16 16:14:50.973][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172417240".
biodb.TRACE[2024-11-16 16:14:50.974][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-16 16:14:50.974][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:50.975][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:50.976][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:50.977][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:50.977][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-16 16:14:50.978][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-11-16 16:14:50.980][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417240/XML".
biodb.DEBUG[2024-11-16 16:14:50.981][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:50.982][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:50.983][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417240/XML".
biodb.TRACE[2024-11-16 16:14:51.056][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172417240/XML).
biodb.TRACE[2024-11-16 16:14:51.155][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172417240.xml"
biodb.DEBUG[2024-11-16 16:14:51.157][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:51.158][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:14:51.159][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:51.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:51.170][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:51.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:51.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.172][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:51.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.177][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:51.177][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:51.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.179][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:51.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:51.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.183][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:51.184][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:51.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:51.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:51.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.189][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:51.190][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:51.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.191][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:51.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:51.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.196][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:51.196][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:51.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.198][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:51.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.202][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:51.202][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:51.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.204][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:51.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.208][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:51.208][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:51.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.211][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.214][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:51.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:51.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.216][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:51.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:51.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.220][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:51.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:51.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.222][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:51.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:51.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.226][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:51.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:51.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.228][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.232][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:51.232][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:51.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.234][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.235][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:51.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.238][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:51.239][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:51.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.240][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:51.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:51.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.244][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:51.245][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:51.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.246][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:51.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.250][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:51.251][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:51.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.252][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:51.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:51.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.256][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:51.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:51.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:51.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.265][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:51.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:51.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:51.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:51.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:51.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.273][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:51.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:51.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:51.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:51.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:51.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.282][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:51.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:51.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:51.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:51.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:51.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:51.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:51.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:51.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:51.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:51.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:51.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:51.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:51.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:51.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:51.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:51.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:51.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:51.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:51.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:51.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:51.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:51.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:51.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:51.343][self$createEntryFromContent] Accession numbers: 172417240.
biodb.DEBUG[2024-11-16 16:14:51.344][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:51.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.361][private$selectFields]
biodb.TRACE[2024-11-16 16:14:51.361][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:51.362][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:51.363][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.365][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.367][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.368][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.370][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.370][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.371][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.373][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.373][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:51.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417240].
biodb.DEBUG[2024-11-16 16:14:51.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:51.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.399][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.400][private$selectFields]
biodb.TRACE[2024-11-16 16:14:51.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:51.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:51.402][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.405][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.405][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.408][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.409][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.409][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.410][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.411][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.412][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.413][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:51.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.423][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-11-16 16:14:51.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:51.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.439][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.439][private$selectFields]
biodb.TRACE[2024-11-16 16:14:51.440][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:51.441][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:51.442][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.447][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.448][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.449][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.452][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.453][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:51.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-11-16 16:14:51.463][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:51.464][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:51.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:51.495][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:51.497][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:51.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-16 16:14:51.499][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:51.500][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-16 16:14:51.502][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:51.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:51.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.518][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.518][private$selectFields]
biodb.TRACE[2024-11-16 16:14:51.519][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:51.520][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:51.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.521][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.522][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.523][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.524][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.525][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.526][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.528][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.530][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.531][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:51.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.541][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172391226].
biodb.DEBUG[2024-11-16 16:14:51.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:51.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.558][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.558][private$selectFields]
biodb.TRACE[2024-11-16 16:14:51.559][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:51.560][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:51.561][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.561][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.562][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.567][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.568][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.571][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.572][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.587][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389755].
biodb.DEBUG[2024-11-16 16:14:51.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:51.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.605][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.605][private$selectFields]
biodb.TRACE[2024-11-16 16:14:51.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:51.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:51.608][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.611][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.614][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.614][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.615][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.617][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.618][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.619][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:51.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.629][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389592].
biodb.DEBUG[2024-11-16 16:14:51.630][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:51.631][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:51.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:51.646][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:51.648][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:51.649][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-11-16 16:14:51.650][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:51.651][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-11-16 16:14:51.653][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:51.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:51.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.669][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.670][private$selectFields]
biodb.TRACE[2024-11-16 16:14:51.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:51.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:51.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.673][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.678][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.679][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.680][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.680][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.681][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.683][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.683][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:51.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.694][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-11-16 16:14:51.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:51.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.711][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.711][private$selectFields]
biodb.TRACE[2024-11-16 16:14:51.712][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:51.713][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:51.714][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.717][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.721][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.721][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.722][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.724][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.725][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:51.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.736][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-11-16 16:14:51.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.753][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.754][private$selectFields]
biodb.TRACE[2024-11-16 16:14:51.754][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:51.755][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:51.756][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.759][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.760][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.761][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.762][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.763][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.764][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:51.764][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.765][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.766][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.767][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:51.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:51.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416852].
biodb.DEBUG[2024-11-16 16:14:51.778][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:51.779][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:51.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:51.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:51.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:51.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:51.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:51.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:51.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:51.811][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:51.813][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:51.814][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:51.815][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:51.872][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:51.872][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:51.874][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:51.875][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:51.990][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:51.992][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-11-16 16:14:51.995][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-11-16 16:14:51.997][private$loadEntries] Creating entries from ids [2]: "172416838, 172416837".
biodb.DEBUG[2024-11-16 16:14:51.998][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-16 16:14:51.999][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172416838, 172416837".
biodb.TRACE[2024-11-16 16:14:52.000][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-11-16 16:14:52.001][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-16 16:14:52.002][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:14:52.003][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:14:52.004][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-16 16:14:52.005][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-16 16:14:52.006][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-16 16:14:52.007][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172416838,172416837/XML".
biodb.DEBUG[2024-11-16 16:14:52.009][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:52.010][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:52.011][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172416838,172416837/XML".
biodb.TRACE[2024-11-16 16:14:52.095][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172416838,172416837/XML).
biodb.TRACE[2024-11-16 16:14:52.239][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416838.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172416837.xml"
biodb.DEBUG[2024-11-16 16:14:52.241][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-16 16:14:52.243][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-11-16 16:14:52.244][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-11-16 16:14:52.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:52.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:52.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:52.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:52.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:52.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:52.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:52.255][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.257][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.271][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.272][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.274][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.278][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.279][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.284][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.285][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.286][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.290][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.291][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.293][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.297][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.298][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.299][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.303][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:52.304][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:52.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.306][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.307][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:52.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.310][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:52.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:52.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.312][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:52.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.316][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:52.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:52.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.319][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:52.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:52.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:52.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:52.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.325][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:52.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:52.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.329][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:52.330][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:52.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:52.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:52.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.335][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:52.336][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:52.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:52.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.341][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:52.342][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:52.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.343][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:52.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:52.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.347][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:52.348][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:52.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.350][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.354][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.363][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.371][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:52.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.380][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:52.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.389][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:52.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:52.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:52.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:52.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:52.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:52.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:52.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:52.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:52.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:52.431][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.433][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.437][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.438][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.443][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.444][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.450][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.450][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.452][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.456][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.457][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.458][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.462][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.463][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.464][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.468][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:52.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:52.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.470][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.471][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-16 16:14:52.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:52.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.474][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:52.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:52.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.477][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:52.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:52.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:52.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:52.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.484][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:52.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:52.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:52.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:52.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.490][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:52.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:52.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.494][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:52.494][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:52.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.496][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.497][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:52.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:52.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.500][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:52.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:52.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.502][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-16 16:14:52.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:52.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.506][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:52.507][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:52.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.508][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:52.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:52.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.512][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:52.513][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:52.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.514][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:52.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:52.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.519][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-16 16:14:52.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:52.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.535][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-16 16:14:52.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:52.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.543][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-16 16:14:52.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:52.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.552][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-16 16:14:52.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:52.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.561][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-16 16:14:52.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:52.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:52.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:52.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:52.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:52.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:52.611][self$createEntryFromContent] Accession numbers: 172416838, 172416837.
biodb.DEBUG[2024-11-16 16:14:52.611][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:52.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:52.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:52.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:52.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:52.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:52.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:52.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:52.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.628][private$selectFields]
biodb.TRACE[2024-11-16 16:14:52.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:52.630][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:52.631][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.634][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.636][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.638][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.640][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.642][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:52.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-11-16 16:14:52.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:52.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:52.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:52.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:52.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:52.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:52.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:52.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.667][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.667][private$selectFields]
biodb.TRACE[2024-11-16 16:14:52.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:52.669][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:52.669][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.670][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.671][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.672][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.676][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.677][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.679][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.680][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:52.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416838].
biodb.DEBUG[2024-11-16 16:14:52.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:52.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:52.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:52.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:52.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:52.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:52.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.706][private$selectFields]
biodb.TRACE[2024-11-16 16:14:52.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:52.708][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:52.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.710][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.712][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.712][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.713][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.715][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.715][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.716][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.719][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.720][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:52.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.730][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416837].
biodb.DEBUG[2024-11-16 16:14:52.730][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:52.731][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:52.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:52.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:52.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:52.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:52.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:52.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:52.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:52.746][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:52.748][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-16 16:14:52.749][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-16 16:14:52.751][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-16 16:14:52.806][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-16 16:14:52.807][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-16 16:14:52.808][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-16 16:14:52.809][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-16 16:14:52.877][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-16 16:14:52.879][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-11-16 16:14:52.882][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-11-16 16:14:52.884][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:52.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:52.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:52.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:52.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:52.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:52.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:52.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:52.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.901][private$selectFields]
biodb.TRACE[2024-11-16 16:14:52.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:52.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:52.903][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.914][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.916][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.918][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.919][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.919][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.920][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.922][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.923][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417275].
biodb.DEBUG[2024-11-16 16:14:52.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:52.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:52.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:52.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:52.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:52.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:52.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.950][private$selectFields]
biodb.TRACE[2024-11-16 16:14:52.951][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:52.952][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:52.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.955][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.956][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.958][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.959][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.960][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.962][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.963][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-11-16 16:14:52.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:52.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:52.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:52.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:52.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:52.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:52.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:52.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.990][private$selectFields]
biodb.TRACE[2024-11-16 16:14:52.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:52.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:52.992][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.992][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.995][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.995][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.996][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:52.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:52.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:52.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:52.999][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.003][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.013][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-11-16 16:14:53.014][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:53.014][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:53.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:53.046][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:53.048][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:53.049][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-11-16 16:14:53.050][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:53.051][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-11-16 16:14:53.053][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:53.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.069][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.070][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.071][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.071][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.072][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.073][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.074][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.076][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.078][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.079][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.080][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.080][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.081][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.082][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.083][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.094][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-11-16 16:14:53.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.110][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.110][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.111][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.112][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.113][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.116][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.119][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.120][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.121][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.123][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.124][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417354].
biodb.DEBUG[2024-11-16 16:14:53.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.149][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.150][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.151][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.152][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.153][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.155][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.156][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.158][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.159][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.162][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.163][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417154].
biodb.DEBUG[2024-11-16 16:14:53.173][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:53.179][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:53.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:53.196][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:53.198][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:53.199][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-11-16 16:14:53.200][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:53.201][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-11-16 16:14:53.202][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:53.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.219][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.220][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.220][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.221][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.222][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.223][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.225][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.225][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.226][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.228][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.229][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.229][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.233][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417240].
biodb.DEBUG[2024-11-16 16:14:53.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.258][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.259][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.260][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.263][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.266][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.267][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.268][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.268][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.269][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.271][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.271][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-11-16 16:14:53.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.297][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.297][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.300][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.303][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.306][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.306][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.307][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.308][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.310][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.311][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.321][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-11-16 16:14:53.321][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:53.322][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:53.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:53.354][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:53.356][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:53.357][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-16 16:14:53.358][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:53.359][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-16 16:14:53.360][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:53.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.376][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.376][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.377][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.378][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.379][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.382][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.383][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.383][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.385][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.386][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.387][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.389][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.390][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.400][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172391226].
biodb.DEBUG[2024-11-16 16:14:53.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.416][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.418][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.421][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.421][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.423][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.424][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.425][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.426][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.428][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.438][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389755].
biodb.DEBUG[2024-11-16 16:14:53.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.461][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.462][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.464][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.465][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.467][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.468][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.468][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.470][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.470][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.471][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.474][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.475][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.485][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389592].
biodb.DEBUG[2024-11-16 16:14:53.485][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:53.486][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:53.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:53.501][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:53.503][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:53.504][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-11-16 16:14:53.505][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:53.506][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-11-16 16:14:53.507][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:53.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.523][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.523][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.529][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.531][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.532][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.533][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.534][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.536][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.537][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-11-16 16:14:53.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.562][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.563][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.564][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.564][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.565][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.566][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.568][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.569][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.571][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.571][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.572][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.575][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.576][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.585][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-11-16 16:14:53.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.601][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.602][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.602][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.603][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.604][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.605][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.606][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.609][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.611][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.613][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.614][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.624][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416852].
biodb.DEBUG[2024-11-16 16:14:53.624][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:53.625][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:53.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:53.656][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:53.658][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:53.659][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-11-16 16:14:53.660][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:53.661][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-11-16 16:14:53.662][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:53.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.678][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.679][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.679][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.680][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.681][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.681][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.682][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.684][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.684][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.687][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.688][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.689][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.691][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.691][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.701][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417440].
biodb.DEBUG[2024-11-16 16:14:53.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.724][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.725][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.725][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.726][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.727][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.727][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.730][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.733][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.734][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.735][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.737][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.738][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416838].
biodb.DEBUG[2024-11-16 16:14:53.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.763][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.764][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.765][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.766][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.767][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.768][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.769][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.770][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.771][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.772][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.773][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.773][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.776][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.777][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416837].
biodb.DEBUG[2024-11-16 16:14:53.788][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:53.789][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:53.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:53.803][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:53.806][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:53.807][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-11-16 16:14:53.808][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:53.809][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-11-16 16:14:53.810][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:53.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.826][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.827][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.828][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.832][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.835][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.836][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.836][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.838][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.839][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.840][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172417275].
biodb.DEBUG[2024-11-16 16:14:53.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.866][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.866][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.867][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.868][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.868][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.869][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.871][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.874][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.875][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.876][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.876][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.877][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.878][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.879][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.889][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416872].
biodb.DEBUG[2024-11-16 16:14:53.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:53.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:53.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:53.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:53.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:53.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:53.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:53.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.905][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.906][private$selectFields]
biodb.TRACE[2024-11-16 16:14:53.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:53.907][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:53.908][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.911][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.913][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.914][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.915][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-16 16:14:53.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.916][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.918][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.919][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-16 16:14:53.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:53.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.928][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172416854].
biodb.DEBUG[2024-11-16 16:14:53.929][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:53.930][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-16 16:14:53.947][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.950][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:53.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-16 16:14:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:14:53.956][biodb::testThat]
biodb.INFO [2024-11-16 16:14:53.957][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-11-16 16:14:53.958][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:14:53.959][biodb::testThat]
biodb.TRACE[2024-11-16 16:14:53.961][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-16 16:14:53.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-16 16:14:53.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-16 16:14:53.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-16 16:14:53.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:53.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:53.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:54.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:54.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:54.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:54.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:54.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:54.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:54.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:54.013][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:54.016][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:54.017][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-16 16:14:54.018][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:54.019][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-16 16:14:54.020][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:54.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:54.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:54.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:54.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:54.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:54.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:54.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:54.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.084][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.087][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.125][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:54.125][private$selectFields]
biodb.TRACE[2024-11-16 16:14:54.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:54.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:54.127][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:54.128][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.130][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.131][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.132][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.133][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.134][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.135][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.136][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.137][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.137][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.139][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.139][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.140][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.142][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.143][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.144][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.145][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.147][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.150][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.151][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.152][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.153][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.154][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.154][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.156][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.157][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.157][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.159][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.162][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.162][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.164][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.167][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.168][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.169][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.170][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.171][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.172][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.174][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.176][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.177][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.177][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.179][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.179][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.180][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.182][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.183][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.184][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.185][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.186][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.188][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.189][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.190][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.191][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.193][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.196][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.197][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.200][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.200][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.202][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.202][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.205][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.205][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.208][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.209][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.211][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.213][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.214][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.215][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.216][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.217][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.218][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.219][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.220][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:54.221][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:54.221][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.222][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.223][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.224][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.225][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.233][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.234][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.237][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.238][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.239][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.240][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.241][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.243][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.244][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.245][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.246][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.248][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.251][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.252][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.254][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.255][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.255][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.257][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.257][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.260][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.263][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.264][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.265][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.266][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.269][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.270][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.271][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.272][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.273][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.274][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.275][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:54.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.355][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.358][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.361][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.426][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172394306, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, 4-(3-imidazo[1,5-a]pyrazinyl)morpholine, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, ...].
biodb.DEBUG[2024-11-16 16:14:54.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:54.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:54.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:54.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:54.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:54.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:54.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:54.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.495][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.498][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.535][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:54.536][private$selectFields]
biodb.TRACE[2024-11-16 16:14:54.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:54.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:54.538][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:54.539][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.540][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.541][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.542][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.542][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.544][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.544][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.545][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.547][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.547][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.548][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.549][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.550][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.551][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.552][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.553][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.554][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.555][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.556][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.558][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.559][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.560][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.561][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.562][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.562][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.565][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.565][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.567][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.567][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.570][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.570][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.571][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.573][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.573][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.574][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.575][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.576][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.577][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.578][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.579][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.580][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.581][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.582][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.583][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.584][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.585][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.588][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.588][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.590][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.590][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.591][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.593][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.593][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.594][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.595][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.596][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.597][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.598][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.599][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.600][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.601][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.602][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.602][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.604][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.605][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.607][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.607][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.608][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.609][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.610][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.611][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.612][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.613][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.615][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.616][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.618][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.619][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.621][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.623][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.624][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.625][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.626][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.627][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.628][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.629][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.630][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:54.630][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:54.631][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.633][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.634][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.635][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.636][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.637][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.637][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.639][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.639][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.640][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.642][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.643][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.644][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.645][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.646][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.646][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.648][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.648][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.649][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.651][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.653][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.654][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.655][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.656][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.657][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.658][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.659][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.660][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.662][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.663][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.663][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.665][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.665][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.668][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.669][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.671][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.672][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.672][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.674][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.674][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.675][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.677][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:54.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.767][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.773][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.835][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172394297, 5-(4-ethylphenyl)-4-fluoro-1-methyl-pyrazole, 5-(4-ethylphenyl)-4-fluoro-1-methylpyrazole, 5-(4-ethylphenyl)-4-fluoro-1-methylpyrazole, 5-(4-ethylphenyl)-4-fluoranyl-1-methyl-pyrazole, ...].
biodb.DEBUG[2024-11-16 16:14:54.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:54.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:54.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:54.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:54.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:54.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:54.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:54.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.882][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.900][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.936][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.939][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:54.940][private$selectFields]
biodb.TRACE[2024-11-16 16:14:54.940][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:54.941][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:54.942][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:54.942][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.945][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.945][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.946][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:54.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.948][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.949][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:54.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.950][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.951][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.952][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:54.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.953][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.954][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.955][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:54.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.956][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.957][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.958][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:54.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.960][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.960][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:54.961][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:54.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.963][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:54.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:54.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.966][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.967][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:54.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.974][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.974][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:54.975][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:54.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.977][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.978][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.979][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:54.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.981][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.981][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:54.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.984][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.984][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:54.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:54.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.986][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.988][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:54.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.989][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.990][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.991][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:54.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.992][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.993][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.994][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:54.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.995][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.996][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:54.997][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:54.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:54.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:54.999][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.000][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.001][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.002][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.003][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.004][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.005][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.006][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.007][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.008][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.009][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.010][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.011][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.012][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.014][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.014][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.015][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.020][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.020][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.021][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.023][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.023][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.024][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.026][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.026][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.029][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.031][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.032][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.034][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.037][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.038][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.039][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.040][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.041][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.042][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.044][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:55.044][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:55.045][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.048][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.049][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.049][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.051][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.051][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.052][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.054][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.055][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.056][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.057][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.058][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.058][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.060][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.061][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.061][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.063][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.064][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.069][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.070][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.073][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.074][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.076][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.078][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.079][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.081][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.082][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.084][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.087][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.088][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.089][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.090][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.091][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.092][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.093][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.094][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:55.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.151][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.181][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.212][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.255][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172393920, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, 2-(3-imidazo[1,5-a]pyrazinyl)morpholine, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, ...].
biodb.DEBUG[2024-11-16 16:14:55.256][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:55.257][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:55.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:55.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:55.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:55.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:55.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:55.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:55.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:55.273][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:55.275][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:55.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-11-16 16:14:55.277][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:55.278][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-11-16 16:14:55.280][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:55.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:55.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:55.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:55.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:55.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:55.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:55.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:55.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.344][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.347][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.386][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:55.386][private$selectFields]
biodb.TRACE[2024-11-16 16:14:55.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:55.388][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:55.389][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:55.389][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.392][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.392][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.393][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.395][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.395][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.396][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.397][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.398][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.399][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.400][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.401][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.402][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.403][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.404][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.405][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.406][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.407][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.409][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.410][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.412][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.415][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.416][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.417][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.418][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.419][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.420][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.421][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.424][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.425][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.425][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.427][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.427][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.428][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.430][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.430][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.431][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.432][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.433][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.434][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.435][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.436][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.437][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.438][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.439][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.440][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.441][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.442][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.442][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.445][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.445][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.447][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.447][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.448][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.450][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.450][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.451][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.452][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.453][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.454][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.455][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.458][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.459][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.460][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.461][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.462][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.463][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.465][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.465][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.466][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.468][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.470][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.471][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.472][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.473][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.474][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.480][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.484][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.485][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.487][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.487][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.488][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.490][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:55.491][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:55.492][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.494][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.495][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.496][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.497][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.498][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.499][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.500][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.501][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.502][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.503][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.504][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.504][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.507][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.508][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.509][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.510][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.512][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.513][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.514][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.515][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.516][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.517][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.518][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.519][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.520][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.522][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.522][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.523][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.524][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.525][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.527][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.528][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.529][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.530][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.534][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.534][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.536][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.537][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.538][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.539][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.540][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:55.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.621][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.624][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.626][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.672][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416823, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[[3-(4-fluorophenyl)-3-oxetanyl]oxy]acetic acid, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyethanoic acid, ...].
biodb.DEBUG[2024-11-16 16:14:55.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:55.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:55.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:55.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:55.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:55.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:55.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:55.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.759][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.762][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.799][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:55.800][private$selectFields]
biodb.TRACE[2024-11-16 16:14:55.801][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:55.802][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:55.802][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:55.803][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.804][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.805][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.806][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.807][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.808][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.809][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.810][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.811][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.812][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.812][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.814][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.814][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.815][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.817][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.817][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.818][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.819][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.820][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.822][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.825][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.826][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.828][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.829][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.829][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.831][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.832][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.834][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.834][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.837][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.837][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.840][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.843][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.844][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.844][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.846][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.846][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.847][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.849][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.849][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.852][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.852][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.853][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.854][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.855][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.856][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.858][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.858][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.859][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.861][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.862][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.862][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.864][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.865][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.867][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.868][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.870][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.873][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.875][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.876][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.877][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.878][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.879][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.880][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.881][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.882][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.884][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.884][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.887][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.887][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.888][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.890][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.890][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.891][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.892][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.893][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.894][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.895][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.896][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:55.897][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:55.897][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.900][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.900][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.901][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.902][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.903][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.904][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.905][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.906][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.907][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.908][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.909][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.910][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.911][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.912][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.913][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.915][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.915][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:55.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.918][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:55.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:55.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.921][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:55.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.924][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.925][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:55.925][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:55.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.927][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.927][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:55.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.930][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:55.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.932][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.933][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:55.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:55.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.935][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:55.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.938][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.939][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.939][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:55.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.941][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.941][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.942][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:55.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.944][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.944][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:55.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:55.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:55.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:55.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:55.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:55.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:55.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:55.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:55.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:55.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.031][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.034][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.037][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.098][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416819, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[[3-(3-fluorophenyl)-3-oxetanyl]oxy]acetic acid, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyethanoic acid, ...].
biodb.DEBUG[2024-11-16 16:14:56.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:56.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:56.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:56.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:56.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:56.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:56.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:56.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.161][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.164][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.202][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:56.202][private$selectFields]
biodb.TRACE[2024-11-16 16:14:56.203][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:56.204][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:56.204][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:56.205][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.206][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.208][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.209][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.211][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.212][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.213][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.238][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.240][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.241][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.242][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.243][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.245][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.246][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.246][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.248][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.248][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.251][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.251][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.253][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.257][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.258][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.259][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.260][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.263][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.264][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.265][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.266][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.269][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.270][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.271][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.272][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.272][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.274][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.275][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.275][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.277][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.278][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.278][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.280][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.281][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.283][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.283][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.284][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.286][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.286][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.287][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.288][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.289][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.290][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.291][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.292][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.293][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.295][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.296][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.297][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.298][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.303][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.303][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.304][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.306][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.306][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.307][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.309][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.310][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.311][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.312][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.313][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.314][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.315][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.316][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.317][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.318][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.319][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.320][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.321][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.322][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.323][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.324][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:56.325][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:56.325][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.326][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.327][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.328][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.329][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.330][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.331][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.332][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.333][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.334][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.335][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.336][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.337][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.338][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.339][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.340][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.341][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.343][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.345][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.348][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.349][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.351][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.351][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.352][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.354][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.355][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.356][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.360][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.362][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.365][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.366][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.367][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.368][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.369][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.370][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.371][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.372][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:56.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.452][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.458][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.533][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416818, 2-[3-(2-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[[3-(2-fluorophenyl)-3-oxetanyl]oxy]acetic acid, 2-[3-(2-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[3-(2-fluorophenyl)oxetan-3-yl]oxyethanoic acid, ...].
biodb.DEBUG[2024-11-16 16:14:56.534][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:56.535][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:56.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:56.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:56.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:56.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:56.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:56.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:56.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:56.555][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:56.557][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:56.558][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-16 16:14:56.559][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:56.560][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-16 16:14:56.562][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:56.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:56.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:56.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:56.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:56.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:56.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:56.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:56.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.626][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.629][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:56.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.674][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:56.675][private$selectFields]
biodb.TRACE[2024-11-16 16:14:56.676][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:56.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:56.677][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:56.678][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.679][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.680][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.681][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.682][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.684][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.685][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.685][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.687][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.688][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.689][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.690][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.691][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.692][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.693][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.694][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.695][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.696][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.697][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.699][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.700][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.701][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.702][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.703][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.705][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.706][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.707][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.708][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.709][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.711][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.712][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.714][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.715][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.717][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.721][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.722][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.723][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.724][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.724][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.726][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.726][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:56.727][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:56.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.729][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.729][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.732][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.733][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.734][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.735][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.736][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.737][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.738][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.739][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.740][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.746][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.747][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.750][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.751][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.753][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.753][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.754][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.755][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.758][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.759][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.760][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.761][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.762][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.763][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.764][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.765][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.765][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.767][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.771][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.772][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.773][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.777][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.778][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.779][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.780][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.781][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.782][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.783][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.784][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:56.785][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:56.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.787][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:56.788][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:56.789][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.789][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.791][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.792][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.793][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.794][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.795][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.796][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.798][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.798][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.799][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.801][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.802][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.803][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.804][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.805][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.806][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.808][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.808][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.811][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.814][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.817][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.818][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.819][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.820][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.823][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.827][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.827][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.830][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.833][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.833][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.834][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.837][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.838][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.839][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.840][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:56.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:56.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:56.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:56.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:56.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:56.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:56.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:56.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:56.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:56.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:56.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:56.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.924][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.927][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.930][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:56.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:56.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:56.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:56.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:56.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:56.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:56.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:56.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:56.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:56.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:56.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172394306, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, 4-(3-imidazo[1,5-a]pyrazinyl)morpholine, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, ...].
biodb.DEBUG[2024-11-16 16:14:56.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:56.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:56.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:57.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:57.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:57.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:57.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.065][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.068][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.107][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.110][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.113][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:57.114][private$selectFields]
biodb.TRACE[2024-11-16 16:14:57.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:57.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:57.116][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:57.117][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.118][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.120][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.121][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.123][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.124][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.125][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.126][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.127][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.128][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.129][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.129][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.131][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.131][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.132][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.134][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.134][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.136][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.139][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.143][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.144][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.145][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.146][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.147][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.148][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.149][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.151][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.151][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.152][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.154][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.156][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.157][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.158][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.159][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.160][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.161][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.162][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.163][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.163][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.165][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.166][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.168][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.168][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.169][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.170][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.171][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.172][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.174][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.175][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.176][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.177][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.178][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.179][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.180][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.180][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.182][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.186][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.190][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.191][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.192][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.193][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.194][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.195][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.196][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.197][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.199][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.201][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.202][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.203][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.204][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.205][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.206][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.208][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.209][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.211][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.212][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.213][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.214][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:57.215][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:57.215][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.218][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.218][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.219][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.220][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.221][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.222][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.223][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.224][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.225][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.227][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.228][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.229][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.230][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.231][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.233][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.234][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.236][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.239][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.243][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.244][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.245][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.246][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.247][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.249][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.255][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.258][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.259][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.260][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.262][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.263][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.264][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.265][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.266][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.268][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.269][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.270][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.271][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:57.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.357][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.359][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.363][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172394297, 5-(4-ethylphenyl)-4-fluoro-1-methyl-pyrazole, 5-(4-ethylphenyl)-4-fluoro-1-methylpyrazole, 5-(4-ethylphenyl)-4-fluoro-1-methylpyrazole, 5-(4-ethylphenyl)-4-fluoranyl-1-methyl-pyrazole, ...].
biodb.DEBUG[2024-11-16 16:14:57.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:57.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:57.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:57.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:57.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:57.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:57.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:57.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.487][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.489][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.534][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.537][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.540][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:57.540][private$selectFields]
biodb.TRACE[2024-11-16 16:14:57.541][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:57.542][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:57.542][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:57.543][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.546][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.547][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.547][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.549][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.550][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.550][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.552][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.552][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.553][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.555][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.555][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.556][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.558][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.558][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.559][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.560][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.561][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.562][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.563][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.565][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.566][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.567][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.568][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.570][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.570][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.572][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.572][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.573][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.575][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.576][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.578][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.578][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.580][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.583][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.584][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.585][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.586][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.587][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.588][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.589][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.590][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.591][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.593][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.595][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.596][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.597][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.598][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.599][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.599][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.601][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.602][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.602][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.604][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.605][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.605][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.607][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.607][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.608][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.610][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.613][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.615][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.618][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.619][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.620][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.621][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.622][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.623][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.625][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.626][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.627][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.628][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.633][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.634][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.634][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.636][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.637][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.637][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.639][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.639][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.640][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.642][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.642][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:57.643][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:57.644][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.647][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.648][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.650][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.650][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.652][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.652][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.653][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.655][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.655][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.656][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.658][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.659][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.660][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.661][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.665][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.666][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.668][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.669][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.670][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.670][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.672][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.672][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.673][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.678][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.678][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.679][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.680][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.681][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.682][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.683][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.684][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.685][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.687][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.688][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.689][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.690][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:57.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.779][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.782][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.785][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.811][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.846][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172393920, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, 2-(3-imidazo[1,5-a]pyrazinyl)morpholine, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, ...].
biodb.DEBUG[2024-11-16 16:14:57.847][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:57.848][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:14:57.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:57.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:57.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:57.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:57.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:57.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:57.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:57.864][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:57.866][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:57.867][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-11-16 16:14:57.868][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:57.869][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-11-16 16:14:57.871][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:57.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:57.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:57.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:57.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:57.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:57.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:57.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:57.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:57.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:57.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:57.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:57.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:57.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:57.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.936][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:57.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:57.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:57.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:57.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:57.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:57.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:57.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:57.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:57.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.973][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.976][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:57.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.979][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:57.980][private$selectFields]
biodb.TRACE[2024-11-16 16:14:57.980][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:57.981][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:57.982][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:57.982][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:57.983][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:57.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.985][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.985][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.986][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:57.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.987][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.988][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.989][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:57.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.990][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.991][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.992][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:57.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:57.994][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.995][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:57.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:57.996][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.002][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.003][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.005][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.006][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.009][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.011][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.012][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.013][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.014][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.015][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.016][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.017][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.018][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.019][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.020][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.021][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.023][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.024][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.026][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.029][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.029][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.030][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.032][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.032][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.033][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.035][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.036][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.037][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.038][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.040][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.041][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.042][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.044][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.045][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.046][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.047][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.048][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.050][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.050][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.052][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.053][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.053][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.055][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.055][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.057][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.060][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.064][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.064][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.067][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.069][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.073][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.076][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.078][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.079][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.080][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.081][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.082][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.082][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.084][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.084][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.085][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.087][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.087][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:58.088][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:58.089][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.091][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.092][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.093][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.094][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.095][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.095][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.097][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.098][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.098][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.100][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.100][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.101][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.103][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.103][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.104][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.106][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.106][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.108][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.109][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.110][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.112][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.114][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.115][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.116][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.117][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.118][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.120][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.123][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.124][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.125][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.127][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.129][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.130][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.130][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.132][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.133][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.135][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.135][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:58.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.190][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.196][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.216][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.219][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.222][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.270][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416823, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[[3-(4-fluorophenyl)-3-oxetanyl]oxy]acetic acid, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[3-(4-fluorophenyl)oxetan-3-yl]oxyethanoic acid, ...].
biodb.DEBUG[2024-11-16 16:14:58.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:58.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:58.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:58.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:58.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:58.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:58.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:58.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.353][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.356][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.394][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.397][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.400][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:58.400][private$selectFields]
biodb.TRACE[2024-11-16 16:14:58.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:58.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:58.402][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:58.403][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.405][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.406][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.407][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.408][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.409][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.410][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.411][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.412][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.412][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.414][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.415][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.415][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.417][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.417][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.418][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.420][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.420][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.422][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.423][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.424][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.425][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.426][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.429][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.429][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.431][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.431][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.434][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.434][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.435][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.436][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.437][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.438][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.440][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.441][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.442][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.443][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.444][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.446][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.447][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.448][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.449][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.450][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.451][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.452][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.454][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.454][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.455][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.457][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.457][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.458][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.459][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.460][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.461][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.462][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.463][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.464][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.465][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.466][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.467][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.468][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.469][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.470][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.471][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.474][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.475][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.477][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.477][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.478][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.480][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.480][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.485][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.486][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.494][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.498][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.499][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.500][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.501][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.502][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.503][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.504][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.505][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.505][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.507][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.508][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:58.508][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:58.509][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.511][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.512][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.513][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.514][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.515][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.516][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.517][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.518][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.519][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.520][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.521][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.521][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.523][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.524][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.524][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.526][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.526][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.529][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.529][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.530][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.531][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.532][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.533][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.534][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.535][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.536][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.537][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.538][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.540][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.541][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.542][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.543][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.544][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.546][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.547][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.548][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.549][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.550][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.551][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.552][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.553][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.554][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.555][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:58.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.637][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.640][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.643][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416819, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[[3-(3-fluorophenyl)-3-oxetanyl]oxy]acetic acid, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[3-(3-fluorophenyl)oxetan-3-yl]oxyethanoic acid, ...].
biodb.DEBUG[2024-11-16 16:14:58.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:58.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:58.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:58.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:58.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:58.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:58.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:58.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.774][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.777][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.814][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.820][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:58.821][private$selectFields]
biodb.TRACE[2024-11-16 16:14:58.822][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:58.822][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:58.823][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:58.824][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.825][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.826][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.827][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.828][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.829][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.830][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.830][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.832][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.833][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.833][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.835][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.835][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.836][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.838][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.838][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.839][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.841][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.841][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.843][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.846][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.849][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.850][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.851][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.852][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.853][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.855][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.858][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.859][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.861][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.861][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.864][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.865][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.867][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.867][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.868][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.869][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.870][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.871][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.872][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.873][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.874][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.875][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.876][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.877][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.878][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.879][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.879][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.881][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.881][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.882][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.883][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.884][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.885][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.886][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.887][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.888][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.889][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.890][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.892][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.893][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.895][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.898][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.898][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.899][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.900][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.901][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.902][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.903][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.904][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.905][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.907][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.909][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.913][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.914][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.915][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.916][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.916][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.918][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.919][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.919][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:14:58.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.921][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.922][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:58.922][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:58.923][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.925][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.926][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.927][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.928][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.929][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.930][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.931][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.932][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.933][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:58.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.934][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.935][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.935][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:58.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.937][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.937][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.938][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:58.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.940][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.940][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:58.941][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:58.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.942][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:58.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:58.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.945][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:58.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.948][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.949][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:58.950][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:58.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.951][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.952][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:58.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.954][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.954][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.955][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:58.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.957][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.957][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:58.958][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:58.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.959][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:58.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.962][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.963][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.964][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:58.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.966][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.967][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:58.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.968][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.969][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:58.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:58.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:58.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:58.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:58.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:58.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.059][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.062][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.065][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.127][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416818, 2-[3-(2-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[[3-(2-fluorophenyl)-3-oxetanyl]oxy]acetic acid, 2-[3-(2-fluorophenyl)oxetan-3-yl]oxyacetic acid, 2-[3-(2-fluorophenyl)oxetan-3-yl]oxyethanoic acid, ...].
biodb.DEBUG[2024-11-16 16:14:59.127][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:14:59.128][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-16 16:14:59.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:14:59.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:59.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:59.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:59.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:59.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:59.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:59.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:14:59.171][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:14:59.174][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:14:59.175][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-16 16:14:59.176][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:14:59.177][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-16 16:14:59.178][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:14:59.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:59.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:59.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:59.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:59.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:59.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:59.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:59.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.247][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.288][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:59.289][private$selectFields]
biodb.TRACE[2024-11-16 16:14:59.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:59.291][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:59.291][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:59.292][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.295][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.296][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.297][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.298][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.298][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.301][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.301][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.303][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.303][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.304][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.305][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.306][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.307][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.309][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.311][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.312][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.313][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.314][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.315][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.317][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.318][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.318][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.320][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.320][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.321][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.323][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.326][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.326][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.328][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.330][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.332][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.333][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.334][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.335][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.336][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.338][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.339][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.340][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.341][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.341][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.343][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.343][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.344][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.346][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.346][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.347][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.349][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.350][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.351][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.352][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.353][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.354][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.355][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.356][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.357][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.358][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.359][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.360][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.361][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.363][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.364][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.364][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.366][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.366][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.367][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.369][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.369][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.370][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.371][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.372][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.373][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.374][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.376][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.377][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.378][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.379][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.380][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.381][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.381][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.383][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.384][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:59.384][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:59.385][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.387][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.388][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.389][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.390][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.391][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.391][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.393][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.394][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.394][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.396][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.396][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.397][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.399][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.399][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.400][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.401][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.402][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.403][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.404][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.405][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.407][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.410][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.411][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.411][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.413][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.414][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.414][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.416][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.416][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.417][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.419][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.419][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.420][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.421][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.423][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.424][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.425][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.426][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.428][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.429][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.431][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.431][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:59.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.520][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.523][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.526][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172391226, 1-(2-ethoxyethyl)-3-methyl-pyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methylpyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methylpyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methyl-pyrrolo[3,2-c]pyridine, ...].
biodb.DEBUG[2024-11-16 16:14:59.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:14:59.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:14:59.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:14:59.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:14:59.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:14:59.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:14:59.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:14:59.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.635][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.652][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.655][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.693][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:59.694][private$selectFields]
biodb.TRACE[2024-11-16 16:14:59.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:14:59.695][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:14:59.696][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:59.696][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.699][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.699][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.700][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.701][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.702][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.703][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.704][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.705][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.706][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.707][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.708][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.709][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.710][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.711][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.711][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.713][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.713][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.718][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.725][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.726][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.728][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.729][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.730][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.731][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.732][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.733][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.734][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.735][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.737][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.738][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.739][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.740][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.742][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.743][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.744][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.744][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.746][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.747][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.747][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.750][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.752][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.752][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.753][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.755][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.755][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.756][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.758][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.758][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.759][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.760][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.761][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.762][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.763][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.764][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.765][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.766][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.767][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.769][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.772][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.773][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.775][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.776][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.778][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.778][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.779][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.780][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.783][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.784][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.785][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.788][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.789][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.790][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.791][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.792][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.793][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.794][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.795][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.796][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:59.797][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:14:59.797][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.800][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.800][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.801][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.803][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.803][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.804][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.806][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.806][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.807][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.809][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.809][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.810][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.811][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.812][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.813][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.814][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.815][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.817][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.820][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.821][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.823][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.824][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.825][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.826][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.827][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.828][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.829][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.830][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.831][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.832][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.833][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.835][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.836][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.838][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.838][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.839][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.841][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.841][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.842][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.844][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.844][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:14:59.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:14:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:14:59.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:14:59.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:14:59.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:14:59.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:14:59.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:14:59.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.898][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:14:59.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:14:59.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:14:59.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:14:59.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.918][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:14:59.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.924][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.927][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.930][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:14:59.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:14:59.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:14:59.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:14:59.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:14:59.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:14:59.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:14:59.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:14:59.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:14:59.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:14:59.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:14:59.999][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172389755, 8,8-difluoro-3-isopropyl-bicyclo[3.2.1]octan-2-ol, 8,8-difluoro-3-propan-2-yl-2-bicyclo[3.2.1]octanol, 8,8-difluoro-3-propan-2-ylbicyclo[3.2.1]octan-2-ol, 8,8-bis(fluoranyl)-3-propan-2-yl-bicyclo[3.2.1]octan-2-ol, ...].
biodb.DEBUG[2024-11-16 16:14:59.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:00.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:00.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:00.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:00.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:00.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:00.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:00.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.061][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.064][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.101][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:00.102][private$selectFields]
biodb.TRACE[2024-11-16 16:15:00.103][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:15:00.103][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:15:00.104][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:00.105][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.107][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.108][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.108][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.110][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.110][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.111][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.113][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.113][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.114][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.115][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.116][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.117][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.118][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.119][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.120][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.121][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.122][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.124][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.124][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.125][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.129][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.130][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.131][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.133][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.134][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.135][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.136][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.136][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.138][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.138][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.139][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.140][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.141][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.142][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.143][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.144][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.145][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.146][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.147][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.148][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.149][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.150][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.152][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.152][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.153][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.155][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.155][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.156][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.158][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.159][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.161][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.162][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.162][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.164][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.164][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.165][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.167][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.168][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.170][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.172][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.173][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.174][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.175][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.176][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.177][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.179][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.180][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.181][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.184][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.184][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.190][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.190][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.191][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.192][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.193][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.194][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.195][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.196][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:00.197][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:00.197][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.200][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.201][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.202][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.203][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.204][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.205][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.212][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.213][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.215][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.216][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.216][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.218][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.218][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.219][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.221][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.223][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.224][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.225][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.229][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.230][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.230][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.233][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.233][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.235][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.236][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.238][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.238][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.240][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.241][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.243][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.244][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.245][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.246][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.247][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.248][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.249][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.250][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:15:00.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.329][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.332][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.335][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172389592, (1S,2S)-3-allyl-2-ethyl-5,5-difluoro-cyclohexanol, (1S,2S)-2-ethyl-5,5-difluoro-3-prop-2-enyl-1-cyclohexanol, (1S,2S)-2-ethyl-5,5-difluoro-3-prop-2-enylcyclohexan-1-ol, (1S,2S)-2-ethyl-5,5-bis(fluoranyl)-3-prop-2-enyl-cyclohexan-1-ol, ...].
biodb.DEBUG[2024-11-16 16:15:00.397][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:15:00.398][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:15:00.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:00.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:00.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:00.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:00.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:00.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:00.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:00.414][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:15:00.416][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:15:00.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-11-16 16:15:00.418][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:15:00.419][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-11-16 16:15:00.421][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:15:00.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:00.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:00.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:00.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:00.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:00.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:00.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:00.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.490][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.493][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.525][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.531][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:00.532][private$selectFields]
biodb.TRACE[2024-11-16 16:15:00.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:15:00.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:15:00.534][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:00.534][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.537][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.537][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.538][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.539][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.540][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.541][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.542][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.543][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.544][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.545][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.546][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.547][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.548][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.549][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.549][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.551][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.552][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.554][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.554][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.555][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.557][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.557][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.558][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.559][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.560][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.561][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.562][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.563][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.565][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.566][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.568][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.569][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.571][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.572][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.574][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.575][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.575][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.577][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.577][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.578][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.580][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.581][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.583][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.584][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.585][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.586][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.586][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.588][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.589][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.589][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.591][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.591][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.592][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.593][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.594][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.595][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.597][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.599][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.600][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.601][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.602][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.603][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.603][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.605][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.605][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.606][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.608][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.608][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.609][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.611][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.612][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.613][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.614][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.615][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.616][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.617][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.618][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.619][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.620][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.620][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.622][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.623][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.623][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.625][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.625][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:00.626][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:00.627][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.628][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.629][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.630][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.630][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.632][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.632][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.633][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.635][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.635][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.636][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.637][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.638][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.639][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.640][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.641][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.642][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.644][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.652][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.653][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.654][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.655][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.658][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.660][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.660][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.663][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.665][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.666][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.667][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.669][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.670][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.671][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.672][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:15:00.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.733][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.760][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.763][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.765][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.827][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416872, 4-phenylthieno[2,3-b]pyridin-3-amine, 4-phenyl-3-thieno[2,3-b]pyridinamine, 4-phenylthieno[2,3-b]pyridin-3-amine, 4-phenylthieno[2,3-b]pyridin-3-amine, ...].
biodb.DEBUG[2024-11-16 16:15:00.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:00.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:00.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:00.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:00.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:00.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:00.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:00.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.875][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.890][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.893][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.931][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:00.932][private$selectFields]
biodb.TRACE[2024-11-16 16:15:00.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:15:00.934][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:15:00.934][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:00.935][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.943][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.944][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.945][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.948][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.949][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.950][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.951][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.951][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.953][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.953][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.954][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:00.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.956][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.956][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.957][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:00.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.958][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.959][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:00.960][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:00.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.961][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.962][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:00.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:00.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.964][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:00.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.967][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.968][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:00.969][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:00.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.970][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.971][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:00.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.973][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:00.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.976][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.977][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:00.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:00.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.979][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:00.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.982][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.982][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.983][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:00.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.984][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.985][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.986][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:00.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.987][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.988][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:00.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:00.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.990][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.991][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.992][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:00.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.994][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.994][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:00.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.996][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.997][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.997][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:00.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:00.999][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:00.999][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.000][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.001][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.002][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.003][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.004][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.005][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.006][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.007][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.010][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.013][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.014][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.014][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.016][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.017][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.019][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.022][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.024][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.025][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.028][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.029][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.030][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.031][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.032][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.034][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:01.034][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:01.035][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.037][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.038][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.039][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.040][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.041][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.042][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.044][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.044][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.046][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.046][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.047][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.049][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.050][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.051][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.052][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.053][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.054][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.056][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.057][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.060][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.061][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.062][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.064][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.066][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.067][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.069][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.069][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.072][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.073][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.074][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.075][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.076][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.077][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.078][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.079][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.080][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.081][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:15:01.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.162][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.165][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.168][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.238][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416854, 1-chloro-1,1-difluoro-5,6-dimethyl-heptane-2,4-dione, 1-chloro-1,1-difluoro-5,6-dimethylheptane-2,4-dione, 1-chloro-1,1-difluoro-5,6-dimethylheptane-2,4-dione, 1-chloranyl-1,1-bis(fluoranyl)-5,6-dimethyl-heptane-2,4-dione, ...].
biodb.DEBUG[2024-11-16 16:15:01.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:01.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:01.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:01.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:01.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:01.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:01.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:01.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.304][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.342][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:01.343][private$selectFields]
biodb.TRACE[2024-11-16 16:15:01.344][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:15:01.344][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:15:01.345][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:01.346][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.348][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.349][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.349][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.351][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.352][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.352][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.354][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.354][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.355][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.357][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.357][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.358][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.360][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.360][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.361][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.362][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.363][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.364][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.365][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.366][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.367][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.368][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.369][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.370][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.371][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.372][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.372][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.374][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.375][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.375][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.377][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.378][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.380][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.380][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.381][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.383][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.383][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.384][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.385][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.386][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.387][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.388][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.389][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.390][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.391][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.392][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.394][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.395][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.396][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.397][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.398][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.399][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.400][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.401][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.401][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.403][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.404][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.404][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.406][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.407][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.407][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.409][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.410][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.412][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.412][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.415][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.415][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.416][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.417][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.418][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.419][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.420][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.421][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.423][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.424][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.435][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.436][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.440][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.441][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.443][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.443][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.444][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.446][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.447][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.448][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.449][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:01.450][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:01.451][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.453][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.453][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.454][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.456][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.456][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.457][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.459][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.459][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.460][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.462][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.462][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.463][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.465][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.465][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.466][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.468][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.469][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.471][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.471][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.472][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.474][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.474][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.475][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.477][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.477][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.478][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.480][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.480][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.485][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.486][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.487][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.488][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.489][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.491][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.492][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.493][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.494][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.495][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.496][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.497][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.498][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:15:01.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.583][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.586][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.607][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416852, 1-chloro-1,1-difluoro-nonane-2,4-dione, 1-chloro-1,1-difluorononane-2,4-dione, 1-chloro-1,1-difluorononane-2,4-dione, 1-chloranyl-1,1-bis(fluoranyl)nonane-2,4-dione, ...].
biodb.DEBUG[2024-11-16 16:15:01.648][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:15:01.649][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:15:01.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:01.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:01.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:01.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:01.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:01.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:01.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:01.669][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:15:01.671][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:15:01.672][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-16 16:15:01.673][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:15:01.674][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-16 16:15:01.675][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:15:01.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:01.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:01.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:01.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:01.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:01.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:01.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:01.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.746][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.749][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.786][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:01.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:01.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.789][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:01.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:01.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.792][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:01.793][private$selectFields]
biodb.TRACE[2024-11-16 16:15:01.794][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:15:01.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:15:01.795][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:01.796][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.798][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.799][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.799][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.801][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.801][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.802][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.804][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.805][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.806][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.807][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.808][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.809][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.810][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.811][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.811][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.813][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.813][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.814][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.816][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.816][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.817][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.818][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.819][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.820][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.822][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.822][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.823][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.824][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.825][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.827][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.829][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.830][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.831][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.833][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.834][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.835][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.837][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.838][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.839][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.840][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.841][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.842][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.843][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:01.844][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:01.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.845][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.846][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.848][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.849][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.850][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.851][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.852][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.853][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.854][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.855][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.856][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.857][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.858][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.859][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.860][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.861][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.862][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.863][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.864][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.866][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.868][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.869][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.870][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.871][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.872][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.873][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.874][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.875][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.876][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.876][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.878][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.881][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.882][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.884][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.885][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.887][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.888][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.889][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.890][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.891][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.891][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.893][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.894][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:01.894][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:01.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.896][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.896][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:01.897][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:01.898][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.900][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.901][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.902][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.903][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.904][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.905][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.907][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.907][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.909][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.909][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.910][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.912][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.913][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:01.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.915][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.915][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:01.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:01.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.917][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:01.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:01.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.920][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.922][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:01.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.923][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.924][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:01.925][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:01.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.926][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.933][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:01.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.936][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.937][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:01.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.940][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.940][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:01.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:01.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.942][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:01.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.945][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.946][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.947][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:01.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.948][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.949][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.950][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:01.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.951][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.952][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:15:01.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:01.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:01.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:01.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:01.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:01.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:01.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:01.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.038][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.041][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.044][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172391226, 1-(2-ethoxyethyl)-3-methyl-pyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methylpyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methylpyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methyl-pyrrolo[3,2-c]pyridine, ...].
biodb.DEBUG[2024-11-16 16:15:02.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:02.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:02.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:02.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:02.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:02.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:02.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:02.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.170][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.173][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.219][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.225][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:02.226][private$selectFields]
biodb.TRACE[2024-11-16 16:15:02.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:15:02.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:15:02.228][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:02.229][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.230][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.232][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.233][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.235][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.235][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.236][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.237][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.238][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.239][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.240][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.241][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.242][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.243][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.244][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.245][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.246][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.247][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.249][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.252][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.253][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.255][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.256][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.256][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.258][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.259][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.259][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.261][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.262][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.264][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.264][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.267][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.267][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.269][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.270][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.271][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.272][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.273][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.274][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.275][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.276][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.277][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.278][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.279][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.280][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.281][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.282][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.283][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.284][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.285][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.286][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.287][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.288][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.289][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.291][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.291][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.293][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.294][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.294][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.296][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.296][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.297][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.299][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.300][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.301][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.302][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.304][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.305][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.306][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.307][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.308][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.310][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.314][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.316][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.317][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.317][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.319][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.320][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.321][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.322][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.323][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.324][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.325][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.326][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.327][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.328][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.329][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:02.330][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:02.330][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.333][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.333][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.334][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.335][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.336][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.337][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.339][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.340][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.341][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.342][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.342][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.344][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.345][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.346][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.347][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.350][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.351][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.352][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.355][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.356][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.356][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.358][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.361][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.361][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.362][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.363][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.364][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.365][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.366][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.369][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.370][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.371][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.372][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.373][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.374][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.375][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.376][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:15:02.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.467][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.470][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.536][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172389755, 8,8-difluoro-3-isopropyl-bicyclo[3.2.1]octan-2-ol, 8,8-difluoro-3-propan-2-yl-2-bicyclo[3.2.1]octanol, 8,8-difluoro-3-propan-2-ylbicyclo[3.2.1]octan-2-ol, 8,8-bis(fluoranyl)-3-propan-2-yl-bicyclo[3.2.1]octan-2-ol, ...].
biodb.DEBUG[2024-11-16 16:15:02.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:02.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:02.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:02.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:02.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:02.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:02.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:02.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.597][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.600][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.606][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.642][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.645][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:02.646][private$selectFields]
biodb.TRACE[2024-11-16 16:15:02.647][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:15:02.647][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:15:02.648][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:02.649][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.652][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.652][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.654][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.654][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.655][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.656][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.657][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.658][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.659][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.660][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.661][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.663][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.664][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.665][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.666][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.671][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.674][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.675][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.675][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.682][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.683][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.684][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.690][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.691][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.693][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.694][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.696][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.697][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.698][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.699][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.700][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.701][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.702][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.703][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.704][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.705][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.706][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.707][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.709][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.709][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.710][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.712][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.712][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.713][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.714][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.715][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.716][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.717][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.718][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.719][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.721][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.722][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.723][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.724][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.725][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.726][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.729][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.730][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.730][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.732][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.733][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.735][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.735][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.737][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.738][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.739][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.740][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.741][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.743][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.744][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.744][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.746][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.746][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.747][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.749][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.750][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.751][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.752][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.753][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:02.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.754][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.755][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:02.756][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:02.757][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.759][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.759][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.760][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.762][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.762][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.763][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.764][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.765][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.766][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.767][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.768][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.769][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.771][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.772][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.773][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.774][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.775][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.776][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.777][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.779][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.780][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.782][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.782][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.783][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.785][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.785][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.787][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.790][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.791][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.793][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.796][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.797][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.798][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.799][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.800][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.801][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.802][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.803][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:15:02.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:02.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:02.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:02.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:02.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:02.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:02.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:02.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:02.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:02.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:02.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.884][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.887][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.890][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:02.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:02.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:02.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:02.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:02.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:02.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:02.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.960][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172389592, (1S,2S)-3-allyl-2-ethyl-5,5-difluoro-cyclohexanol, (1S,2S)-2-ethyl-5,5-difluoro-3-prop-2-enyl-1-cyclohexanol, (1S,2S)-2-ethyl-5,5-difluoro-3-prop-2-enylcyclohexan-1-ol, (1S,2S)-2-ethyl-5,5-bis(fluoranyl)-3-prop-2-enyl-cyclohexan-1-ol, ...].
biodb.DEBUG[2024-11-16 16:15:02.961][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:15:02.962][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-16 16:15:02.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:02.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:02.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:02.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:02.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:02.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:02.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:02.978][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-16 16:15:02.981][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-16 16:15:02.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-11-16 16:15:02.983][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:15:02.984][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-11-16 16:15:02.986][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-16 16:15:02.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:02.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:02.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:02.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:02.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:02.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:02.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:02.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:02.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:02.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.033][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.048][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.089][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.095][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:03.096][private$selectFields]
biodb.TRACE[2024-11-16 16:15:03.096][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:15:03.097][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:15:03.098][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:03.099][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.099][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.101][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.101][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.102][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.104][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.104][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.105][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.107][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.107][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.108][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.110][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.110][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.111][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.113][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.113][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.114][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.115][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.116][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.118][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.121][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.122][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.122][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.124][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.125][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.125][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.127][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.127][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.128][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.129][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.130][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.131][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.133][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.135][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.136][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.137][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.138][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.139][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.139][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.141][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.142][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.142][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.144][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.144][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.145][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.146][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.147][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.149][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.150][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.151][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.152][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.153][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.154][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.155][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.156][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.156][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.158][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.159][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.161][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.161][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.162][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.163][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.164][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.165][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.166][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.169][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.179][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.180][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.183][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.185][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.188][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.189][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.190][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.191][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.193][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.194][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.195][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.195][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.197][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.198][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.198][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.200][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.201][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.201][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.203][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.204][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:03.204][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:03.205][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.206][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.208][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.209][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.211][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.212][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.213][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.214][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.215][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.216][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.217][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.217][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.219][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.220][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.220][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.222][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.222][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.225][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.225][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.226][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.228][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.228][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.230][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.231][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.232][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.233][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.234][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.237][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.239][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.239][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.240][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.241][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.242][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.244][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.245][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.246][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.247][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.248][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.249][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.250][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.251][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:15:03.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.335][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.338][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.400][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416872, 4-phenylthieno[2,3-b]pyridin-3-amine, 4-phenyl-3-thieno[2,3-b]pyridinamine, 4-phenylthieno[2,3-b]pyridin-3-amine, 4-phenylthieno[2,3-b]pyridin-3-amine, ...].
biodb.DEBUG[2024-11-16 16:15:03.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:03.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:03.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:03.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:03.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:03.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:03.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.457][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.471][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.474][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.516][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.519][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:03.519][private$selectFields]
biodb.TRACE[2024-11-16 16:15:03.520][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:15:03.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:15:03.521][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:03.522][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.523][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.524][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.525][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.526][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.527][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.528][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.529][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.530][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.531][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.532][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.534][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.534][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.536][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.537][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.537][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.539][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.539][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.540][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.542][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.545][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.547][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.548][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.549][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.550][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.551][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.553][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.554][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.555][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.556][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.557][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.559][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.560][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.562][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.562][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.563][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.565][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.566][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.567][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.568][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.569][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.570][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.571][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.572][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.573][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.574][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.574][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.576][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.577][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.577][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.579][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.580][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.581][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.582][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.583][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.584][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.585][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.586][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.588][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.590][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.592][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.593][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.594][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.594][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.596][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.597][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.599][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.601][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.602][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.604][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.605][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.607][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.611][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.612][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.613][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.614][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.614][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.616][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.616][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.617][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.619][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.619][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:03.620][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:03.621][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.623][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.624][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.624][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.626][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.626][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.627][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.629][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.629][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.630][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.631][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.632][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.633][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.634][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.635][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.636][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.637][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.638][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.640][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.641][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.646][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.647][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.649][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.653][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.654][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.655][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.658][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.659][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.660][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.661][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.667][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.669][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.670][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.671][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.673][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.674][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:15:03.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.755][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.758][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.761][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416854, 1-chloro-1,1-difluoro-5,6-dimethyl-heptane-2,4-dione, 1-chloro-1,1-difluoro-5,6-dimethylheptane-2,4-dione, 1-chloro-1,1-difluoro-5,6-dimethylheptane-2,4-dione, 1-chloranyl-1,1-bis(fluoranyl)-5,6-dimethyl-heptane-2,4-dione, ...].
biodb.DEBUG[2024-11-16 16:15:03.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:03.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:03.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:03.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:03.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:03.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:03.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:03.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.884][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.886][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.931][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.934][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.937][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:03.938][private$selectFields]
biodb.TRACE[2024-11-16 16:15:03.939][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-16 16:15:03.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-16 16:15:03.940][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:03.941][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.943][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.944][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.945][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.946][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.947][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.947][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.949][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.949][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.950][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.952][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.952][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.953][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:03.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.954][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.955][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.956][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:03.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.957][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.958][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:03.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:03.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.960][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:03.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:03.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.963][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.964][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:03.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.966][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.967][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:03.967][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:03.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.969][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.969][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.970][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:03.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.971][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.972][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.973][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:03.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.974][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.975][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:03.976][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:03.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.977][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.978][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:03.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.980][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.981][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.981][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:03.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.983][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.983][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.984][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:03.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.985][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.986][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.987][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:03.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.988][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.989][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:03.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:03.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.991][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.992][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.993][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:03.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.994][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.995][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.995][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:03.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:03.997][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:03.997][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.998][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:03.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.000][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.000][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:04.001][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:04.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.003][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:04.004][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:04.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.005][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.006][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:04.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:04.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.008][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:04.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:04.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.011][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.012][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:04.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:04.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.014][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.015][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:04.015][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:04.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.017][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.017][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:04.018][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:04.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.020][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.020][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:04.021][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:04.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.022][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.023][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:04.024][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:04.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.025][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.028][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.029][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:04.030][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:04.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.031][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.032][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:04.032][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:04.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.034][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.035][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-16 16:15:04.035][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-16 16:15:04.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.037][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.037][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:04.038][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-16 16:15:04.039][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.041][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.042][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:04.042][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:04.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.044][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.044][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:04.045][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:04.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.047][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.047][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:04.048][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:04.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.050][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:04.051][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:04.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.052][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.053][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:04.054][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:04.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.055][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.056][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:04.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:04.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.058][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:04.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:04.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.060][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.061][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:04.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:04.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.064][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:04.065][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:04.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.066][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.067][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:04.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:04.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.069][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:04.070][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:04.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.072][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:04.073][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:04.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.074][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.075][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.077][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.078][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:04.079][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:04.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.080][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.081][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:04.082][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:04.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.083][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.084][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-16 16:15:04.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:04.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:04.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:04.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:04.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:04.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-16 16:15:04.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:04.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:04.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:04.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-16 16:15:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:04.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:04.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:04.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-16 16:15:04.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:04.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:04.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:04.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:04.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:04.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-16 16:15:04.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:04.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:04.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:04.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:04.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:04.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-16 16:15:04.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:04.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:04.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:04.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:04.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-16 16:15:04.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-16 16:15:04.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:04.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:04.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:04.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:04.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-16 16:15:04.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-16 16:15:04.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:04.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:04.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:04.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:04.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-16 16:15:04.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-16 16:15:04.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.173][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:04.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:04.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.176][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:04.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:04.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.179][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-16 16:15:04.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-16 16:15:04.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:04.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:04.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:04.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:04.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-16 16:15:04.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:04.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:04.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:04.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:04.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-16 16:15:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:04.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:04.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:04.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:04.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-16 16:15:04.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-16 16:15:04.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:04.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:04.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-16 16:15:04.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:04.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:04.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.233][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:04.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-16 16:15:04.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.241][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172416852, 1-chloro-1,1-difluoro-nonane-2,4-dione, 1-chloro-1,1-difluorononane-2,4-dione, 1-chloro-1,1-difluorononane-2,4-dione, 1-chloranyl-1,1-bis(fluoranyl)nonane-2,4-dione, ...].
biodb.DEBUG[2024-11-16 16:15:04.242][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-16 16:15:04.243][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-16 16:15:04.248][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-16 16:15:04.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-16 16:15:04.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.251][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-16 16:15:04.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-16 16:15:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:15:04.257][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-16 16:15:04.258][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-11-16 16:15:04.259][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-11-16 16:15:04.260][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-16 16:15:04.260][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.262][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.263][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-16 16:15:04.267][biodb::testContext]
biodb.INFO [2024-11-16 16:15:04.267][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-16 16:15:04.268][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-11-16 16:15:04.269][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-16 16:15:04.269][biodb::testContext]
biodb.INFO [2024-11-16 16:15:04.271][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-16 16:15:04.272][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-11-16 16:15:04.275][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:15:04.276][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-16 16:15:04.277][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-16 16:15:04.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.279][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-16 16:15:04.280][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-16 16:15:04.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.283][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-16 16:15:04.284][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-16 16:15:04.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.286][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-16 16:15:04.287][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-16 16:15:04.288][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-16 16:15:04.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.290][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-16 16:15:04.291][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-16 16:15:04.292][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-16 16:15:04.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.294][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-16 16:15:04.295][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-16 16:15:04.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.298][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-16 16:15:04.298][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-16 16:15:04.299][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-16 16:15:04.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.302][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-16 16:15:04.303][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-16 16:15:04.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.305][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-16 16:15:04.306][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-16 16:15:04.307][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-16 16:15:04.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.309][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-16 16:15:04.310][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-16 16:15:04.311][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-16 16:15:04.311][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-16 16:15:04.312][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-16 16:15:04.313][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-16 16:15:04.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.316][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-16 16:15:04.316][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-16 16:15:04.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.319][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-16 16:15:04.320][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-16 16:15:04.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.322][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-16 16:15:04.323][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-16 16:15:04.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.326][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-16 16:15:04.326][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-16 16:15:04.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.329][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-16 16:15:04.330][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-16 16:15:04.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.332][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-16 16:15:04.333][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-16 16:15:04.350][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-16 16:15:04.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.353][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-16 16:15:04.354][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-16 16:15:04.355][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-16 16:15:04.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.358][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-16 16:15:04.359][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.360][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-16 16:15:04.360][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.361][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:15:04.362][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.363][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.363][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.364][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.365][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-16 16:15:04.365][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:15:04.366][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.367][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-16 16:15:04.368][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:15:04.368][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.369][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.370][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:15:04.370][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:15:04.370][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:15:04.370][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-16 16:15:04.370][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-16 16:15:04.371][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:15:04.371][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.372][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.373][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:15:04.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.374][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.375][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.375][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.376][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:15:04.377][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:15:04.377][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.378][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.379][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-16 16:15:04.380][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.381][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-16 16:15:04.382][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.382][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:15:04.383][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.384][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.385][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.385][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.386][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-16 16:15:04.387][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:15:04.387][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.388][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-16 16:15:04.389][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:15:04.390][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.390][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.391][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:15:04.391][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:15:04.391][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:15:04.391][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-16 16:15:04.391][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-16 16:15:04.392][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:15:04.393][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.393][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.394][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:15:04.395][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.396][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.397][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.397][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:15:04.398][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:15:04.399][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.400][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.400][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-16 16:15:04.402][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.402][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-16 16:15:04.403][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.404][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:15:04.405][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.405][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.406][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.407][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.414][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-16 16:15:04.415][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:15:04.416][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.417][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-16 16:15:04.418][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:15:04.419][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.420][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.421][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.421][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:15:04.422][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.423][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.424][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:15:04.424][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.425][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.426][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.426][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.427][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:15:04.428][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:15:04.429][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.429][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.430][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-16 16:15:04.431][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.432][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-16 16:15:04.433][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.434][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:15:04.434][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.435][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.436][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.437][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.437][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-16 16:15:04.438][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:15:04.439][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.440][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-16 16:15:04.441][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:15:04.441][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.442][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.443][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.444][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-16 16:15:04.444][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.445][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.446][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:15:04.446][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.447][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.448][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.448][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.449][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:15:04.450][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:15:04.451][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.451][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.452][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:15:04.453][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.509][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-16 16:15:04.510][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-16 16:15:04.511][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-16 16:15:04.512][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-16 16:15:04.513][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-16 16:15:04.515][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-16 16:15:04.516][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-16 16:15:04.517][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-16 16:15:04.518][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-16 16:15:04.519][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-16 16:15:04.520][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-16 16:15:04.521][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-16 16:15:04.522][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-16 16:15:04.523][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-16 16:15:04.524][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-16 16:15:04.525][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-16 16:15:04.526][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-16 16:15:04.527][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-16 16:15:04.528][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-16 16:15:04.529][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-16 16:15:04.530][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-16 16:15:04.531][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-16 16:15:04.532][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-16 16:15:04.533][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-16 16:15:04.534][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-16 16:15:04.535][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-16 16:15:04.536][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-16 16:15:04.537][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-16 16:15:04.538][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-16 16:15:04.539][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-16 16:15:04.540][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-16 16:15:04.541][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-16 16:15:04.542][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-16 16:15:04.543][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-16 16:15:04.544][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-16 16:15:04.545][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-16 16:15:04.546][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-16 16:15:04.547][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-16 16:15:04.548][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-16 16:15:04.549][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-16 16:15:04.550][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-16 16:15:04.551][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-16 16:15:04.552][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-16 16:15:04.553][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-16 16:15:04.554][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-16 16:15:04.555][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-16 16:15:04.556][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-16 16:15:04.557][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-16 16:15:04.557][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-16 16:15:04.558][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-16 16:15:04.559][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-16 16:15:04.560][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-16 16:15:04.561][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-16 16:15:04.562][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-16 16:15:04.563][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-16 16:15:04.564][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-16 16:15:04.565][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-16 16:15:04.566][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-16 16:15:04.567][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-16 16:15:04.568][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-16 16:15:04.569][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-16 16:15:04.570][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-16 16:15:04.571][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-16 16:15:04.572][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-16 16:15:04.573][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-16 16:15:04.574][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-16 16:15:04.575][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-16 16:15:04.576][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-16 16:15:04.577][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-16 16:15:04.578][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-16 16:15:04.579][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-16 16:15:04.580][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-16 16:15:04.581][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-16 16:15:04.582][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-16 16:15:04.583][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-16 16:15:04.584][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-16 16:15:04.585][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-16 16:15:04.586][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-16 16:15:04.587][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-16 16:15:04.588][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-16 16:15:04.589][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-16 16:15:04.590][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-16 16:15:04.591][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-16 16:15:04.592][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-16 16:15:04.593][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-16 16:15:04.594][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-16 16:15:04.595][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.596][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-16 16:15:04.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-16 16:15:04.684][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-11-16 16:15:04.686][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-11-16 16:15:04.687][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.688][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-11-16 16:15:04.689][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.689][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:15:04.690][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.691][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.692][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.692][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.693][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-11-16 16:15:04.694][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:15:04.695][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.695][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-11-16 16:15:04.696][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:15:04.697][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-11-16 16:15:04.697][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-11-16 16:15:04.698][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.698][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.699][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-16 16:15:04.700][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.700][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.701][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:15:04.702][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.703][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.703][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.704][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-16 16:15:04.704][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-11-16 16:15:04.705][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:15:04.705][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:15:04.706][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.707][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.708][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-11-16 16:15:04.709][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.710][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-11-16 16:15:04.710][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.711][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:15:04.712][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.713][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.713][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.714][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.715][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:15:04.716][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:15:04.716][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.717][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-11-16 16:15:04.718][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:15:04.719][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-11-16 16:15:04.719][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-11-16 16:15:04.719][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-11-16 16:15:04.719][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-11-16 16:15:04.719][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-11-16 16:15:04.719][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-11-16 16:15:04.719][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.720][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:15:04.721][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-16 16:15:04.721][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.722][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.723][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:15:04.724][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.724][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.725][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.726][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:15:04.726][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:15:04.726][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:15:04.727][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:15:04.728][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.728][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.729][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-16 16:15:04.731][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.731][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-11-16 16:15:04.732][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.733][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:15:04.734][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.734][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.735][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.736][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.737][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:15:04.737][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:15:04.738][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.739][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.740][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-16 16:15:04.741][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.742][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-16 16:15:04.742][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-16 16:15:04.742][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-16 16:15:04.743][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-16 16:15:04.743][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.744][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.745][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:15:04.746][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.746][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.747][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.748][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:15:04.748][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:15:04.748][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-16 16:15:04.748][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:15:04.749][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:15:04.750][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.751][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-16 16:15:04.752][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-16 16:15:04.753][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.754][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-11-16 16:15:04.754][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.755][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-16 16:15:04.756][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.757][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.757][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.758][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.759][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-16 16:15:04.760][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-16 16:15:04.761][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.762][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-11-16 16:15:04.762][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-16 16:15:04.763][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-11-16 16:15:04.763][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-16 16:15:04.764][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-16 16:15:04.764][self$setPropertyValue]
biodb.DEBUG[2024-11-16 16:15:04.765][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-16 16:15:04.766][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.767][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.767][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-16 16:15:04.768][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-16 16:15:04.769][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-16 16:15:04.769][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-16 16:15:04.770][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-16 16:15:04.770][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-16 16:15:04.770][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-16 16:15:04.771][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-16 16:15:04.771][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-16 16:15:04.772][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-16 16:15:04.773][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-16 16:15:04.774][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-11-16 16:15:04.775][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-16 16:15:04.776][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-16 16:15:04.777][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-11-16 16:15:04.778][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-16 16:15:04.779][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-11-16 16:15:04.783][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-16 16:15:04.784][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-11-16 16:15:04.785][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-16 16:15:04.786][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-11-16 16:15:04.787][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-16 16:15:04.788][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-16 16:15:04.789][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-11-16 16:15:04.790][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-16 16:15:04.790][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-16 16:15:04.791][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-16 16:15:04.795][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-11-16 16:15:04.798][biodb::testThat]
biodb.INFO [2024-11-16 16:15:04.799][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-11-16 16:15:04.800][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:15:04.800][biodb::testThat]
biodb.TRACE[2024-11-16 16:15:04.802][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-11-16 16:15:04.803][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:15:04.806][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-11-16 16:15:04.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:04.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:04.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:04.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:04.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:04.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:04.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:04.817][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.819][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.823][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.824][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.825][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:15:04.858][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-11-16 16:15:04.860][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:15:04.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:15:04.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.863][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:15:04.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:15:04.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:15:04.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:15:04.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.869][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:15:04.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:15:04.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.872][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:15:04.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:15:04.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.874][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:15:04.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:15:04.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.877][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:15:04.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:15:04.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:04.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.946][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.948][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.970][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.981][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:04.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:04.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.983][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:04.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.988][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:04.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:04.990][ef$get] fields variable is a list.
biodb.INFO [2024-11-16 16:15:04.997][biodb::testThat]
biodb.INFO [2024-11-16 16:15:04.998][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-16 16:15:04.999][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:15:04.999][biodb::testThat]
biodb.DEBUG[2024-11-16 16:15:05.001][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-11-16 16:15:05.002][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-16 16:15:05.004][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-11-16 16:15:05.006][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-16 16:15:05.008][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-11-16 16:15:05.008][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-11-16 16:15:05.009][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-11-16 16:15:05.010][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-11-16 16:15:05.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-16 16:15:05.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:05.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:05.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:05.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:05.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:05.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-16 16:15:05.021][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:05.022][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:05.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.023][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:05.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:05.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:05.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:05.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.030][ef$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:05.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-16 16:15:05.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:05.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:05.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:05.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:05.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:05.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:05.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:05.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-16 16:15:05.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:05.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:05.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:05.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:05.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:05.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:05.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:05.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:05.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:05.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:05.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-16 16:15:05.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-16 16:15:05.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-16 16:15:05.063][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-11-16 16:15:05.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-16 16:15:05.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-16 16:15:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:15:05.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-16 16:15:05.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:15:05.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-16 16:15:05.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:15:05.079][biodb::testThat]
biodb.INFO [2024-11-16 16:15:05.080][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-16 16:15:05.081][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:15:05.081][biodb::testThat]
biodb.INFO [2024-11-16 16:15:05.086][biodb::testThat]
biodb.INFO [2024-11-16 16:15:05.087][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-11-16 16:15:05.088][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:15:05.088][biodb::testThat]
biodb.WARN [2024-11-16 16:15:05.091][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-11-16 16:15:05.094][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-11-16 16:15:05.101][biodb::testThat]
biodb.INFO [2024-11-16 16:15:05.102][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-11-16 16:15:05.103][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:15:05.103][biodb::testThat]
biodb.TRACE[2024-11-16 16:15:05.112][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:15:05.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:15:05.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.115][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:15:05.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:15:05.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:15:05.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:15:05.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.121][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:15:05.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:15:05.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.124][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:15:05.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:15:05.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.127][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:15:05.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:15:05.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:15:05.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:15:05.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.133][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:15:05.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:15:05.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.136][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-16 16:15:05.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-16 16:15:05.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:15:05.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-16 16:15:05.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:15:05.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:15:05.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-16 16:15:05.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-16 16:15:05.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.148][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-16 16:15:05.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-16 16:15:05.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-16 16:15:05.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-16 16:15:05.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-16 16:15:05.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-16 16:15:05.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-16 16:15:05.158][biodb::testThat]
biodb.INFO [2024-11-16 16:15:05.159][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-11-16 16:15:05.167][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:15:05.168][biodb::testThat]
biodb.INFO [2024-11-16 16:15:05.176][biodb::testThat]
biodb.INFO [2024-11-16 16:15:05.177][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-11-16 16:15:05.178][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:15:05.178][biodb::testThat]
biodb.INFO [2024-11-16 16:15:05.185][biodb::testThat]
biodb.INFO [2024-11-16 16:15:05.186][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-11-16 16:15:05.187][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:15:05.188][biodb::testThat]
biodb.DEBUG[2024-11-16 16:15:05.191][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-11-16 16:15:05.274][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-11-16 16:15:05.356][biodb::testThat]
biodb.INFO [2024-11-16 16:15:05.357][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-11-16 16:15:05.358][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-16 16:15:05.358][biodb::testThat]
biodb.DEBUG[2024-11-16 16:15:05.455][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-11-16 16:15:05.514][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-16 16:15:05.515][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-11-16 16:15:05.516][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-11-16 16:15:05.517][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-16 16:15:05.518][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-16 16:15:05.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-16 16:15:05.519][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-16 16:15:05.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-16 16:15:05.520][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-16 16:15:05.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1029 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1029 ]
> 
> proc.time()
   user  system elapsed 
 34.012   1.586  65.775

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.2Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)