Back to Long Tests report for BioC 3.21

This page was generated on 2025-04-19 23:55 -0400 (Sat, 19 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4831
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4573
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 8/30HostnameOS / ArchCHECK
biodbNcbi 1.12.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-04-19 09:55 -0400 (Sat, 19 Apr 2025)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_21
git_last_commit: eff8ab9
git_last_commit_date: 2025-04-15 12:47:49 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino7Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on lconway

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.12.0.tar.gz
StartedAt: 2025-04-19 16:01:32 -0400 (Sat, 19 Apr 2025)
EndedAt: 2025-04-19 16:03:29 -0400 (Sat, 19 Apr 2025)
EllapsedTime: 117.0 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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Type 'license()' or 'licence()' for distribution details.

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2025-04-19 16:02:22.481][biodb::testContext]
biodb.INFO [2025-04-19 16:02:22.483][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:02:22.484][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2025-04-19 16:02:22.485][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:02:22.486][biodb::testContext]
biodb.INFO [2025-04-19 16:02:22.490][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:02:22.491][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-19 16:02:22.496][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:22.497][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-19 16:02:22.498][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-19 16:02:22.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.501][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-19 16:02:22.514][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-19 16:02:22.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.517][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-19 16:02:22.518][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-19 16:02:22.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.521][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-19 16:02:22.522][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-19 16:02:22.523][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-19 16:02:22.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.526][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-19 16:02:22.526][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-19 16:02:22.527][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-19 16:02:22.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.530][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-19 16:02:22.530][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-19 16:02:22.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.533][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-19 16:02:22.534][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-19 16:02:22.535][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-19 16:02:22.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.537][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-19 16:02:22.538][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-19 16:02:22.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.541][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-19 16:02:22.542][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-19 16:02:22.542][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-19 16:02:22.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.545][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:02:22.546][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-19 16:02:22.546][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-19 16:02:22.547][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-19 16:02:22.548][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-19 16:02:22.549][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-19 16:02:22.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.551][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-19 16:02:22.552][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-19 16:02:22.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.555][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-19 16:02:22.556][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-19 16:02:22.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.558][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-19 16:02:22.559][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-19 16:02:22.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.562][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-19 16:02:22.563][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-19 16:02:22.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.566][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-19 16:02:22.567][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-19 16:02:22.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.569][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:02:22.570][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-19 16:02:22.587][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-19 16:02:22.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.590][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-19 16:02:22.591][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-19 16:02:22.592][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-19 16:02:22.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.596][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-19 16:02:22.626][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.637][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-19 16:02:22.638][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.639][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:22.640][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.640][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.641][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.642][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.643][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:02:22.644][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:22.644][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.645][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-19 16:02:22.646][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:22.646][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.647][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.648][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:22.648][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:22.648][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:22.648][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:02:22.648][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:02:22.649][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:22.650][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:22.650][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:22.651][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:22.652][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:22.652][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:22.653][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.654][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.654][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:22.655][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:22.656][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.656][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.657][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-19 16:02:22.659][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.659][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:02:22.660][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.661][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:22.662][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.663][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.663][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.664][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.665][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:02:22.666][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:22.667][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.667][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-19 16:02:22.668][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:22.669][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.670][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.670][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:22.670][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:22.670][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:22.670][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:02:22.670][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:02:22.671][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:22.672][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:22.673][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:22.673][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:22.674][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:22.675][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:22.675][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.676][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.677][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:22.677][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:22.678][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.679][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.680][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-19 16:02:22.681][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.682][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-19 16:02:22.683][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.684][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:22.685][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.685][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.686][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.687][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.688][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:02:22.689][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:22.689][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.690][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-19 16:02:22.691][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:22.692][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.692][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.693][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.694][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:22.695][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:22.695][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:22.696][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:22.697][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:22.698][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:22.698][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.699][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.700][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:22.701][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:22.701][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.702][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.703][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-19 16:02:22.704][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.705][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:02:22.706][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.707][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:22.707][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.708][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.709][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.710][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.711][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:02:22.711][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:22.712][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.713][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-19 16:02:22.714][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:22.715][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.716][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:22.716][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.717][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:22.718][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:22.719][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:22.719][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:22.720][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:22.721][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:22.722][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:22.722][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.723][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:22.724][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:22.725][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:22.725][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:22.728][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:22.729][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.791][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-19 16:02:22.795][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-19 16:02:22.796][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-19 16:02:22.797][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-19 16:02:22.798][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-19 16:02:22.799][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-19 16:02:22.800][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-19 16:02:22.801][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-19 16:02:22.802][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-19 16:02:22.803][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-19 16:02:22.804][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-19 16:02:22.805][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-19 16:02:22.806][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-19 16:02:22.807][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-19 16:02:22.808][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:02:22.809][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:02:22.810][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-19 16:02:22.811][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-19 16:02:22.812][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-19 16:02:22.813][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-19 16:02:22.815][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-19 16:02:22.816][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-19 16:02:22.817][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-19 16:02:22.818][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-19 16:02:22.819][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-19 16:02:22.820][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-19 16:02:22.821][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-19 16:02:22.822][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-19 16:02:22.823][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-19 16:02:22.824][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-19 16:02:22.825][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-19 16:02:22.826][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-19 16:02:22.827][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-19 16:02:22.828][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-19 16:02:22.829][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-19 16:02:22.830][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-19 16:02:22.831][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-19 16:02:22.832][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-19 16:02:22.833][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-19 16:02:22.834][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-19 16:02:22.835][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-19 16:02:22.836][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-19 16:02:22.837][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-19 16:02:22.838][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-19 16:02:22.839][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-19 16:02:22.840][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:02:22.841][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-19 16:02:22.842][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-19 16:02:22.843][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-19 16:02:22.844][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-19 16:02:22.845][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-19 16:02:22.846][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-19 16:02:22.847][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-19 16:02:22.849][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-19 16:02:22.850][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-19 16:02:22.851][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-19 16:02:22.852][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-19 16:02:22.853][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-19 16:02:22.854][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-19 16:02:22.855][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-19 16:02:22.857][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-19 16:02:22.858][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-19 16:02:22.859][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-19 16:02:22.860][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-19 16:02:22.861][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-19 16:02:22.862][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-19 16:02:22.863][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-19 16:02:22.865][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-19 16:02:22.866][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-19 16:02:22.867][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-19 16:02:22.868][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-19 16:02:22.869][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-19 16:02:22.870][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-19 16:02:22.871][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-19 16:02:22.873][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-19 16:02:22.874][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-19 16:02:22.875][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-19 16:02:22.876][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-19 16:02:22.877][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-19 16:02:22.878][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-19 16:02:22.879][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-19 16:02:22.880][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-19 16:02:22.881][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-19 16:02:22.886][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-19 16:02:22.887][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:02:22.890][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:22.890][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.892][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.941][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:22.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:22.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:22.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:22.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:22.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:22.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:22.988][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-04-19 16:02:22.996][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-04-19 16:02:22.997][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.009][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-04-19 16:02:23.010][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.011][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:23.012][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.013][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.013][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.014][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.015][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-04-19 16:02:23.016][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:23.017][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.017][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-04-19 16:02:23.018][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:23.019][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-04-19 16:02:23.019][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-04-19 16:02:23.020][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:23.021][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:23.021][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-19 16:02:23.022][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:23.023][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:23.024][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:23.025][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:23.025][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:23.026][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.027][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-04-19 16:02:23.027][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-04-19 16:02:23.028][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:23.029][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:23.029][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.030][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:23.031][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-04-19 16:02:23.033][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.033][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-04-19 16:02:23.034][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.035][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:23.036][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.037][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.038][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.038][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.039][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:02:23.040][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:23.041][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.042][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-04-19 16:02:23.042][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:23.066][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-04-19 16:02:23.066][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-04-19 16:02:23.066][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-04-19 16:02:23.066][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-04-19 16:02:23.066][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-04-19 16:02:23.066][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-04-19 16:02:23.067][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:23.068][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:23.069][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-19 16:02:23.069][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:23.070][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:23.071][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:23.072][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:23.072][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:23.073][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.074][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:02:23.074][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:02:23.075][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:23.075][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:23.076][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.077][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:23.078][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-04-19 16:02:23.079][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:23.080][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-04-19 16:02:23.081][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.082][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:23.082][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.083][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.084][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.085][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.086][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:02:23.086][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:23.087][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.088][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-04-19 16:02:23.089][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.090][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:23.091][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:23.091][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:23.091][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:23.091][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:23.092][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-04-19 16:02:23.093][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:23.094][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:23.095][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:23.095][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:23.096][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:23.097][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.098][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:02:23.098][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:02:23.098][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-04-19 16:02:23.098][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:23.099][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:23.100][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.101][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-04-19 16:02:23.102][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-04-19 16:02:23.103][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.104][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-04-19 16:02:23.105][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.106][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:23.107][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.107][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.108][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.109][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.110][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:02:23.110][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:23.111][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.112][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-04-19 16:02:23.113][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:23.114][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-04-19 16:02:23.114][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-04-19 16:02:23.114][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:23.115][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:23.116][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-04-19 16:02:23.117][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:23.118][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:23.118][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:23.119][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:23.120][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:23.121][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:23.121][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:02:23.121][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:02:23.121][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-04-19 16:02:23.122][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:23.123][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:23.124][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:23.125][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-04-19 16:02:23.129][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-04-19 16:02:23.131][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:02:23.132][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:02:23.133][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-04-19 16:02:23.134][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:02:23.135][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-04-19 16:02:23.153][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-04-19 16:02:23.154][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-04-19 16:02:23.157][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-04-19 16:02:23.160][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-04-19 16:02:23.163][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:23.163][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:23.164][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-04-19 16:02:23.165][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:23.166][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:23.167][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2025-04-19 16:02:23.174][biodb::testThat]
biodb.INFO [2025-04-19 16:02:23.175][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-19 16:02:23.176][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:23.176][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:23.180][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2025-04-19 16:02:23.181][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:23.184][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-04-19 16:02:23.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:23.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:23.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:23.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:23.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:23.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:23.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:23.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.240][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:23.249][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.270][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:23.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:23.330][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2025-04-19 16:02:23.332][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.339][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.360][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:23.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:23.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.363][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:23.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:23.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.366][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.370][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:23.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.453][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.471][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:23.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.474][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.477][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.480][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:23.481][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.483][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:23.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.493][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.495][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.501][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.502][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.518][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2025-04-19 16:02:23.546][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:23.547][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-04-19 16:02:23.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:23.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:23.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:23.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:23.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:23.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:23.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:23.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.584][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:23.585][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.587][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:23.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:23.622][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-04-19 16:02:23.636][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.640][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.643][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:23.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:23.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:23.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.649][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:23.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:23.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.652][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:23.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:23.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:23.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.724][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.725][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.737][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:23.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.740][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.743][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.746][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:23.747][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.749][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.759][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.760][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:23.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:23.765][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:23.766][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:23.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:23.767][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:23.775][biodb::testThat]
biodb.INFO [2025-04-19 16:02:23.775][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-19 16:02:23.776][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:23.777][biodb::testThat]
biodb.DEBUG[2025-04-19 16:02:23.778][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2025-04-19 16:02:23.783][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:02:23.786][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2025-04-19 16:02:23.787][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2025-04-19 16:02:23.788][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-04-19 16:02:23.789][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:23.790][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:23.790][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-04-19 16:02:23.791][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:23.792][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:23.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:23.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:23.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:23.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:23.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:23.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:23.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:23.810][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-04-19 16:02:23.825][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:23.826][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:23.827][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2025-04-19 16:02:25.049][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2025-04-19 16:02:26.173][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:26.175][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2025-04-19 16:02:26.186][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2025-04-19 16:02:26.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:26.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:26.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:26.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:26.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:26.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:26.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:26.212][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2025-04-19 16:02:26.223][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:26.224][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:26.242][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2025-04-19 16:02:27.319][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2025-04-19 16:02:28.415][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:28.416][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2025-04-19 16:02:28.419][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2025-04-19 16:02:28.421][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2025-04-19 16:02:28.423][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:28.424][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2025-04-19 16:02:28.425][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2025-04-19 16:02:28.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:28.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:28.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:28.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:28.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:28.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:28.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:28.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.452][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:28.453][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.455][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:28.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:28.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:28.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:28.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:28.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:28.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:28.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:28.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:28.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.498][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:28.499][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.501][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:28.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:28.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:28.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:28.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:28.549][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2025-04-19 16:02:28.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:28.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:28.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:28.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:28.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:28.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:28.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:28.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:28.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:28.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:28.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:28.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:28.579][biodb::testThat]
biodb.INFO [2025-04-19 16:02:28.579][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-19 16:02:28.580][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:28.581][biodb::testThat]
biodb.INFO [2025-04-19 16:02:28.586][biodb::testThat]
biodb.INFO [2025-04-19 16:02:28.587][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-19 16:02:28.588][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:28.588][biodb::testThat]
biodb.WARN [2025-04-19 16:02:28.606][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-04-19 16:02:28.619][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-04-19 16:02:28.627][biodb::testThat]
biodb.INFO [2025-04-19 16:02:28.628][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-19 16:02:28.628][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:28.629][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:28.647][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.650][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:28.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:28.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.656][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:28.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:28.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.659][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:28.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:28.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:28.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:28.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.675][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.678][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:28.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.681][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:28.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:28.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.684][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:28.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:28.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.687][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:28.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:28.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:28.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:28.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:28.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:28.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:28.697][biodb::testThat]
biodb.INFO [2025-04-19 16:02:28.698][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-19 16:02:28.699][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:28.699][biodb::testThat]
biodb.INFO [2025-04-19 16:02:28.707][biodb::testThat]
biodb.INFO [2025-04-19 16:02:28.707][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-19 16:02:28.708][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:28.709][biodb::testThat]
biodb.INFO [2025-04-19 16:02:28.715][biodb::testThat]
biodb.INFO [2025-04-19 16:02:28.715][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-19 16:02:28.716][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:28.717][biodb::testThat]
biodb.DEBUG[2025-04-19 16:02:28.720][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-04-19 16:02:29.868][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2025-04-19 16:02:31.330][biodb::testThat]
biodb.INFO [2025-04-19 16:02:31.331][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-19 16:02:31.332][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:31.332][biodb::testThat]
biodb.INFO [2025-04-19 16:02:31.337][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-19 16:02:31.338][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-04-19 16:02:31.339][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-04-19 16:02:31.340][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-19 16:02:31.340][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.342][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.343][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-19 16:02:31.351][biodb::testContext]
biodb.INFO [2025-04-19 16:02:31.352][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:02:31.353][biodb::testContext] Test context - Gene long tests
biodb.INFO [2025-04-19 16:02:31.354][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:02:31.354][biodb::testContext]
biodb.INFO [2025-04-19 16:02:31.356][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:02:31.364][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-19 16:02:31.367][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:31.367][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-19 16:02:31.368][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-19 16:02:31.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.371][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-19 16:02:31.371][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-19 16:02:31.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.374][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-19 16:02:31.375][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-19 16:02:31.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.378][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-19 16:02:31.379][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-19 16:02:31.379][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-19 16:02:31.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.382][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-19 16:02:31.383][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-19 16:02:31.384][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-19 16:02:31.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.386][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-19 16:02:31.387][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-19 16:02:31.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.390][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-19 16:02:31.391][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-19 16:02:31.391][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-19 16:02:31.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.394][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-19 16:02:31.395][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-19 16:02:31.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.398][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-19 16:02:31.399][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-19 16:02:31.399][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-19 16:02:31.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.402][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:02:31.403][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-19 16:02:31.404][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-19 16:02:31.405][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-19 16:02:31.405][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-19 16:02:31.406][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-19 16:02:31.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.409][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-19 16:02:31.410][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-19 16:02:31.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.413][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-19 16:02:31.414][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-19 16:02:31.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.416][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-19 16:02:31.417][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-19 16:02:31.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.420][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-19 16:02:31.421][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-19 16:02:31.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.423][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-19 16:02:31.424][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-19 16:02:31.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.427][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:02:31.428][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-19 16:02:31.444][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-19 16:02:31.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.447][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-19 16:02:31.448][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-19 16:02:31.449][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-19 16:02:31.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.452][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-19 16:02:31.453][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.454][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-19 16:02:31.455][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.456][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:31.457][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.458][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.458][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.459][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.464][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:02:31.465][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:31.465][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.466][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-19 16:02:31.467][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:31.468][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.468][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.469][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:31.469][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:31.469][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:31.469][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:02:31.469][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:02:31.470][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:31.471][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.471][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.472][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:31.473][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.474][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.474][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.475][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.476][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:31.476][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:31.477][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.478][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.478][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-19 16:02:31.480][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.480][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:02:31.481][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.482][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:31.483][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.483][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.484][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.485][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.486][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:02:31.486][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:31.487][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.488][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-19 16:02:31.488][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:31.489][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.490][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.491][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:31.491][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:31.491][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:31.491][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:02:31.491][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:02:31.492][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:31.493][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.493][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.494][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:31.495][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.495][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.496][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.497][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.497][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:31.498][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:31.499][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.500][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.501][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-19 16:02:31.502][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.503][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-19 16:02:31.504][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.504][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:31.505][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.506][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.506][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.507][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.508][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:02:31.509][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:31.509][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.510][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-19 16:02:31.511][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:31.512][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.512][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.513][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.514][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:31.515][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.515][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.516][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:31.517][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.518][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.519][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.519][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:31.520][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:31.521][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.521][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.522][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-19 16:02:31.524][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.524][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:02:31.525][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.526][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:31.526][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.527][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.528][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.529][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.530][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:02:31.530][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:31.531][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.532][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-19 16:02:31.533][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:31.533][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.534][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.535][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.536][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:31.536][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.537][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.538][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:31.538][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.539][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.540][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.545][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.545][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:31.546][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:31.547][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.547][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.548][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:31.549][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.609][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-19 16:02:31.610][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-19 16:02:31.611][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-19 16:02:31.612][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-19 16:02:31.613][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-19 16:02:31.614][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-19 16:02:31.615][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-19 16:02:31.616][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-19 16:02:31.618][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-19 16:02:31.619][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-19 16:02:31.620][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-19 16:02:31.621][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-19 16:02:31.622][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-19 16:02:31.627][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-19 16:02:31.628][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:02:31.629][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:02:31.630][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-19 16:02:31.631][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-19 16:02:31.632][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-19 16:02:31.633][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-19 16:02:31.634][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-19 16:02:31.635][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-19 16:02:31.636][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-19 16:02:31.637][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-19 16:02:31.638][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-19 16:02:31.639][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-19 16:02:31.640][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-19 16:02:31.641][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-19 16:02:31.642][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-19 16:02:31.644][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-19 16:02:31.645][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-19 16:02:31.646][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-19 16:02:31.647][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-19 16:02:31.648][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-19 16:02:31.649][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-19 16:02:31.650][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-19 16:02:31.651][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-19 16:02:31.652][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-19 16:02:31.653][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-19 16:02:31.655][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-19 16:02:31.656][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-19 16:02:31.657][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-19 16:02:31.658][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-19 16:02:31.659][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-19 16:02:31.660][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-19 16:02:31.661][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:02:31.662][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-19 16:02:31.663][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-19 16:02:31.665][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-19 16:02:31.666][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-19 16:02:31.667][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-19 16:02:31.668][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-19 16:02:31.669][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-19 16:02:31.670][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-19 16:02:31.671][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-19 16:02:31.672][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-19 16:02:31.673][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-19 16:02:31.674][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-19 16:02:31.675][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-19 16:02:31.676][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-19 16:02:31.677][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-19 16:02:31.678][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-19 16:02:31.679][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-19 16:02:31.681][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-19 16:02:31.681][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-19 16:02:31.682][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-19 16:02:31.683][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-19 16:02:31.684][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-19 16:02:31.685][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-19 16:02:31.687][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-19 16:02:31.688][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-19 16:02:31.689][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-19 16:02:31.689][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-19 16:02:31.691][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-19 16:02:31.692][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-19 16:02:31.693][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-19 16:02:31.694][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-19 16:02:31.695][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-19 16:02:31.696][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-19 16:02:31.697][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-19 16:02:31.698][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-19 16:02:31.699][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-19 16:02:31.700][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-19 16:02:31.701][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-19 16:02:31.702][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:02:31.708][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:31.708][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.709][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:31.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:31.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:31.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:31.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:31.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:31.796][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-04-19 16:02:31.804][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-04-19 16:02:31.806][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.818][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-04-19 16:02:31.819][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.819][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:31.820][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.821][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.822][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.823][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.823][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-04-19 16:02:31.824][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:31.825][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.826][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-04-19 16:02:31.826][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:31.827][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-04-19 16:02:31.827][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-04-19 16:02:31.828][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.829][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.830][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-19 16:02:31.830][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.831][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.832][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:31.832][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.833][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.834][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.834][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-04-19 16:02:31.834][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-04-19 16:02:31.835][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:31.836][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:31.836][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.837][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.838][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-04-19 16:02:31.840][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.840][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-04-19 16:02:31.841][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.842][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:31.842][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.843][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.844][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.845][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.846][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:02:31.846][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:31.847][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.848][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-04-19 16:02:31.849][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:31.850][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-04-19 16:02:31.850][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-04-19 16:02:31.850][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-04-19 16:02:31.850][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-04-19 16:02:31.850][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-04-19 16:02:31.850][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-04-19 16:02:31.850][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.851][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:31.852][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-19 16:02:31.853][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.853][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.854][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:31.855][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.855][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.856][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.857][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:02:31.857][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:02:31.858][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:31.858][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:31.859][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.860][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.865][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-04-19 16:02:31.867][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.867][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-04-19 16:02:31.868][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.869][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:31.870][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.871][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.871][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.872][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.873][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:02:31.874][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:31.874][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.875][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-04-19 16:02:31.876][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:31.877][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.878][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:31.878][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:31.878][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:31.879][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-04-19 16:02:31.880][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.881][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.881][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:31.882][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.883][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.883][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.884][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:02:31.884][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:02:31.884][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-04-19 16:02:31.885][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:31.886][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:31.886][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.887][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-04-19 16:02:31.888][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-04-19 16:02:31.890][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.891][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-04-19 16:02:31.891][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.892][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:31.893][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.894][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.894][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.895][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.896][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:02:31.897][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:31.897][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.898][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-04-19 16:02:31.899][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:31.899][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-04-19 16:02:31.899][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-04-19 16:02:31.900][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:31.901][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:31.902][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-04-19 16:02:31.902][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.903][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.904][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:31.904][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:31.905][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:31.906][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:31.906][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:02:31.906][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:02:31.906][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-04-19 16:02:31.907][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:31.908][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:31.908][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:31.909][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-04-19 16:02:31.910][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-04-19 16:02:31.911][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:02:31.912][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:02:31.914][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-04-19 16:02:31.915][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:02:31.916][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-04-19 16:02:31.921][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2025-04-19 16:02:31.922][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2025-04-19 16:02:31.923][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2025-04-19 16:02:31.924][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-04-19 16:02:31.925][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:31.926][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:31.927][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-04-19 16:02:31.928][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:31.929][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:31.979][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2025-04-19 16:02:31.982][biodb::testThat]
biodb.INFO [2025-04-19 16:02:31.983][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-19 16:02:31.984][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:31.985][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:31.989][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2025-04-19 16:02:31.990][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:31.992][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-04-19 16:02:31.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:31.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:31.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:32.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:32.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:32.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:32.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:32.011][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.018][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:32.019][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:32.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:32.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.030][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:32.031][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:32.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.033][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:32.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.036][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:32.037][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:32.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.043][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:32.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:32.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.047][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:32.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.050][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:32.051][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:32.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.054][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:32.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:32.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:32.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:32.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:32.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:32.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:32.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:32.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:32.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:32.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:32.094][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2025-04-19 16:02:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:32.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:32.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.099][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:32.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:32.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:32.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:32.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:32.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:32.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:32.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:32.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:32.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:32.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:32.145][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-04-19 16:02:32.166][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-04-19 16:02:32.167][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-04-19 16:02:32.168][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-04-19 16:02:32.180][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-04-19 16:02:32.181][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:32.182][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-04-19 16:02:32.195][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:32.196][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:32.197][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-04-19 16:02:32.198][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:32.199][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-04-19 16:02:32.199][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:32.200][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-04-19 16:02:32.209][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2025-04-19 16:02:32.210][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2025-04-19 16:02:32.211][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:32.213][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2025-04-19 16:02:32.214][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:32.215][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:32.215][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:32.216][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-04-19 16:02:32.217][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:32.218][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:32.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:32.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:32.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:32.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:32.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:32.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:32.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:32.229][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2025-04-19 16:02:32.231][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:32.232][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:32.233][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2025-04-19 16:02:33.297][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2025-04-19 16:02:34.370][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:34.371][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2025-04-19 16:02:34.374][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2025-04-19 16:02:34.377][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2025-04-19 16:02:34.378][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:34.379][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:34.380][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-04-19 16:02:34.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:34.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:34.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:34.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:34.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:34.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:34.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:34.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.404][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:34.404][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.414][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:34.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:34.447][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2025-04-19 16:02:34.447][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.450][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.454][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:34.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:34.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.459][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:34.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:34.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.463][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:34.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:34.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:34.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:34.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.530][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:34.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.545][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:34.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:34.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.548][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:34.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.552][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:34.552][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:34.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.554][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:34.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.568][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:34.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:34.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.571][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:34.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:34.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.574][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:34.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.577][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:34.577][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:34.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.580][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:34.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.589][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.592][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.595][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.597][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.598][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.619][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.619][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:34.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:34.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.637][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:34.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:34.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.641][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:34.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.643][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:34.644][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:34.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.646][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:34.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:34.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.655][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:34.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:34.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:34.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:34.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:34.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:34.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.664][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:34.665][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:34.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.667][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:34.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:34.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.676][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:34.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.679][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.682][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.685][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:34.686][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.688][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:34.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.697][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.698][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.703][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:34.704][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:34.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.714][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.721][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:34.721][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:34.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.726][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:34.727][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:34.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.732][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:34.733][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:34.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.738][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.739][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.744][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.745][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.753][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2025-04-19 16:02:34.754][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:34.754][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-04-19 16:02:34.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:34.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:34.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:34.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:34.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:34.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:34.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:34.772][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.773][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.778][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:34.779][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:34.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:34.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:34.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.784][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:34.785][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:34.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.788][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:34.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:34.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.791][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:34.791][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:34.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.801][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:34.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:34.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:34.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.808][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.808][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.812][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:34.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:34.849][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2025-04-19 16:02:34.850][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.853][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:34.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:34.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:34.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:34.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:34.865][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-04-19 16:02:34.866][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2025-04-19 16:02:34.901][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:34.912][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2025-04-19 16:02:34.913][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:34.914][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:34.915][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:34.916][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-04-19 16:02:34.917][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:34.917][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:34.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:34.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:34.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:34.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:34.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:34.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:34.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:34.940][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2025-04-19 16:02:34.942][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:34.943][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:34.943][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2025-04-19 16:02:36.433][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2025-04-19 16:02:37.515][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:37.516][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2025-04-19 16:02:37.519][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2025-04-19 16:02:37.521][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2025-04-19 16:02:37.523][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:37.524][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:37.525][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-04-19 16:02:37.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:37.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:37.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:37.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:37.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:37.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:37.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:37.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.548][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:37.549][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.551][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:37.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:37.589][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2025-04-19 16:02:37.596][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:37.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.607][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:37.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:37.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.610][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:37.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:37.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.613][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:37.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:37.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:37.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:37.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:37.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:37.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:37.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:37.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:37.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:37.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.676][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.677][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.689][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:37.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:37.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.692][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:37.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:37.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.695][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:37.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:37.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.697][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:37.698][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:37.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:37.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:37.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.710][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:37.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:37.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.713][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:37.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:37.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.844][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:37.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:37.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.847][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:37.847][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:37.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.849][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:37.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:37.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.859][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:37.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:37.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.861][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:37.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:37.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.864][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:37.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:37.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.867][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:37.868][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:37.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.870][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:37.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:37.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.888][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.888][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.890][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:37.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.899][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:37.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:37.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.902][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:37.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:37.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.905][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:37.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:37.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.908][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:37.909][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:37.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:37.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:37.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:37.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:37.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:37.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:37.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.928][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:37.929][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:37.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.931][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.942][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:37.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.948][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.952][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:37.953][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.954][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.955][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:37.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.966][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.967][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:37.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.973][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:37.974][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:37.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.980][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:37.981][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:37.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.987][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:37.988][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:37.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:37.994][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:37.995][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:37.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:37.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.001][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:38.002][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.008][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.009][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.015][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.016][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.027][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2025-04-19 16:02:38.028][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:38.029][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-04-19 16:02:38.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:38.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:38.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:38.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:38.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:38.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:38.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:38.054][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.055][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.056][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.062][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:38.062][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:38.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.064][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.066][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:38.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.069][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:38.070][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.073][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:38.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.077][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:38.077][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.079][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.081][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.084][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:38.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.089][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:38.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.092][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.093][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:38.139][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2025-04-19 16:02:38.141][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.145][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:38.158][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-04-19 16:02:38.159][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2025-04-19 16:02:38.160][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:38.161][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2025-04-19 16:02:38.162][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:38.163][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2025-04-19 16:02:38.164][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:38.165][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:38.166][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-04-19 16:02:38.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:38.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:38.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:38.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:38.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:38.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:38.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:38.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.195][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:38.196][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.198][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:38.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:38.230][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-04-19 16:02:38.231][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.233][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.236][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.239][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:38.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:38.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:38.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:38.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:38.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.248][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:38.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:38.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.307][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.319][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:38.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.323][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.326][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.329][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:38.330][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.332][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:38.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.342][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:38.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.345][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.348][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.351][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:38.352][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.354][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:38.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.364][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.367][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.370][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.375][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.376][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.378][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.397][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.398][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.410][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:38.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:38.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.413][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:38.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:38.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.415][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:38.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:38.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.418][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:38.419][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:38.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.421][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:38.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:38.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.431][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:38.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:38.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:38.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.439][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:38.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:38.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.452][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:38.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.455][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.467][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:38.467][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.469][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.470][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:38.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.479][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.480][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.485][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.486][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.492][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.492][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.498][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:38.498][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:38.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.503][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.504][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.509][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:38.510][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.516][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.516][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.521][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.522][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.530][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2025-04-19 16:02:38.531][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:38.532][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-04-19 16:02:38.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:38.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:38.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:38.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:38.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:38.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:38.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:38.552][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.554][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.558][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:38.559][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:38.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.562][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:38.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.565][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:38.566][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.569][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:38.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:38.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.572][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:38.573][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.576][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.579][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:38.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.582][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:38.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:38.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.585][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.586][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.590][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:38.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:38.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:38.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:38.628][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2025-04-19 16:02:38.630][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.633][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:38.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:38.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:38.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:38.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:38.645][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-04-19 16:02:38.646][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2025-04-19 16:02:38.646][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:38.648][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2025-04-19 16:02:38.649][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:38.649][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:38.650][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:38.651][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-04-19 16:02:38.652][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:38.653][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:38.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:38.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:38.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:38.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:38.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:38.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:38.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:38.663][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2025-04-19 16:02:38.665][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:38.666][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:38.667][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2025-04-19 16:02:39.805][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2025-04-19 16:02:40.931][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:40.933][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2025-04-19 16:02:40.936][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2025-04-19 16:02:40.938][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2025-04-19 16:02:40.940][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:40.941][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:40.942][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-04-19 16:02:40.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:40.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:40.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:40.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:40.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:40.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:40.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:40.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.964][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:40.966][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:40.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.968][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:40.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:40.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:40.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:40.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:40.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:40.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:40.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:40.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:40.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.000][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2025-04-19 16:02:41.001][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.009][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.012][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:41.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:41.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.014][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:41.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:41.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:41.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.020][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:41.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.086][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.087][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.098][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:41.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:41.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.101][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:41.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:41.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.103][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:41.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:41.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.106][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:41.107][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:41.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.109][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:41.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:41.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.118][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:41.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.121][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:41.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:41.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.124][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:41.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.127][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:41.127][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:41.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.129][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:41.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:41.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.139][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.141][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.147][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.148][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.149][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.150][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.168][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.169][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.170][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.180][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:41.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:41.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.186][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:41.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:41.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.189][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:41.190][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:41.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.192][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:41.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:41.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:41.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:41.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:41.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:41.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:41.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.210][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:41.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:41.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:41.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:41.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:41.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.226][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.229][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.232][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:41.233][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.235][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:41.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.244][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.245][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.251][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:41.252][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:41.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.257][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.258][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.259][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.263][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:41.264][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:41.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.269][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:41.270][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:41.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.276][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:41.277][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:41.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.282][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.283][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.289][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.290][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.303][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2025-04-19 16:02:41.305][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:41.306][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-04-19 16:02:41.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:41.340][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.348][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:41.349][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:41.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.352][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:41.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:41.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.360][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:41.361][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:41.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.365][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.368][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:41.368][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:41.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:41.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:41.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.375][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:41.375][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:41.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:41.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.382][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.382][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.389][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:41.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:41.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:41.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.428][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2025-04-19 16:02:41.430][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.433][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:41.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:41.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:41.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:41.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:41.444][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-04-19 16:02:41.445][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2025-04-19 16:02:41.446][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:41.447][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2025-04-19 16:02:41.448][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:41.449][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:41.450][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:41.450][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-04-19 16:02:41.451][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:41.452][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:41.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:41.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:41.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:41.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:41.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:41.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:41.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:41.463][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2025-04-19 16:02:41.465][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:41.465][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:41.466][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2025-04-19 16:02:42.500][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2025-04-19 16:02:43.553][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:43.555][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2025-04-19 16:02:43.558][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2025-04-19 16:02:43.560][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2025-04-19 16:02:43.561][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:43.562][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:43.563][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-04-19 16:02:43.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:43.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:43.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:43.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:43.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:43.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:43.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:43.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.591][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:43.592][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.595][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:43.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:43.628][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2025-04-19 16:02:43.629][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.635][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:43.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:43.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.641][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:43.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:43.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.644][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:43.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:43.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.647][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:43.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:43.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:43.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:43.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:43.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:43.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:43.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:43.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:43.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.707][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.708][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.721][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:43.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:43.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.724][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:43.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:43.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.727][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:43.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:43.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.731][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:43.731][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:43.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.734][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:43.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:43.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.752][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:43.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:43.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.755][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:43.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:43.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.758][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:43.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:43.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.760][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:43.761][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:43.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.763][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.773][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.776][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.779][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.782][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.782][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.784][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.820][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.821][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.833][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:43.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.836][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:43.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:43.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.839][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:43.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:43.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.841][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:43.842][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:43.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.844][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:43.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:43.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:43.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:43.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.863][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:43.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:43.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.866][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:43.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:43.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.876][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:43.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.882][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.885][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:43.885][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.887][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:43.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.898][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.898][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:43.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.904][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:43.905][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:43.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.911][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.917][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:43.918][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:43.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.923][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:43.924][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:43.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.930][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:43.931][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:43.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.932][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.937][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.937][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:43.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.943][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.944][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:43.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.952][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2025-04-19 16:02:43.953][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:43.954][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-04-19 16:02:43.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:43.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:43.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:43.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:43.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:43.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:43.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:43.971][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.974][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:43.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.978][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:43.979][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:43.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.980][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.981][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:43.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:43.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.985][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:43.985][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:43.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.988][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:43.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:43.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.991][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:43.992][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:43.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.995][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:43.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:43.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:43.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:43.998][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:43.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:44.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.002][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:44.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:44.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.005][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:44.006][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:44.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:44.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:44.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:44.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:44.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:44.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:44.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:44.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:44.047][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2025-04-19 16:02:44.049][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:44.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.052][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:44.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:44.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:44.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:44.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:44.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:44.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:44.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:44.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:44.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:44.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:44.070][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-04-19 16:02:44.071][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2025-04-19 16:02:44.072][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:44.073][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2025-04-19 16:02:44.074][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:44.075][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:44.076][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:44.076][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-04-19 16:02:44.077][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:44.078][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:44.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:44.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:44.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:44.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:44.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:44.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:44.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:44.088][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2025-04-19 16:02:44.090][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:44.091][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:44.092][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2025-04-19 16:02:45.288][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2025-04-19 16:02:46.418][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:46.420][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2025-04-19 16:02:46.423][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2025-04-19 16:02:46.426][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2025-04-19 16:02:46.427][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:46.428][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:46.429][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-04-19 16:02:46.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:46.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:46.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:46.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:46.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:46.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:46.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.471][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:46.472][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.474][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:46.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:46.508][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2025-04-19 16:02:46.508][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.511][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.514][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.517][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:46.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:46.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.520][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:46.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.523][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:46.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:46.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.527][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:46.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.588][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:46.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.604][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:46.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.607][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:46.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:46.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.611][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:46.611][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:46.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.613][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:46.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:46.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.624][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:46.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.627][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:46.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:46.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.630][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:46.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:46.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.633][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:46.634][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:46.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.636][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.636][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:46.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:46.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.646][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.649][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.655][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.656][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.678][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.678][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.690][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:46.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.694][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:46.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:46.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.697][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:46.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:46.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.699][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:46.700][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:46.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.702][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:46.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:46.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:46.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:46.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:46.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:46.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:46.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:46.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.731][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:46.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:46.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.733][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:46.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:46.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.743][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:46.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.746][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.749][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.752][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:46.753][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.755][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:46.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.765][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.766][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.771][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:46.772][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:46.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.778][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.784][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:46.785][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:46.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.790][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:46.791][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:46.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.796][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:46.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:46.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.798][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.803][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.804][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.809][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.810][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.818][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2025-04-19 16:02:46.819][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:46.820][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-04-19 16:02:46.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:46.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:46.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:46.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:46.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:46.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:46.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:46.836][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.843][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:46.844][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:46.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:46.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:46.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.850][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:46.851][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:46.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.853][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.857][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:46.857][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:46.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.859][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:46.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:46.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.863][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:46.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:46.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.866][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:46.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:46.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.869][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.870][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:46.911][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2025-04-19 16:02:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.917][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:46.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:46.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:46.929][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-04-19 16:02:46.930][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2025-04-19 16:02:46.931][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:02:46.932][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2025-04-19 16:02:46.933][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:02:46.934][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:02:46.935][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:46.935][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-04-19 16:02:46.936][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:46.937][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-04-19 16:02:46.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:46.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:46.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:46.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:46.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:46.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:46.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:46.949][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2025-04-19 16:02:46.951][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:46.952][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:46.953][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2025-04-19 16:02:48.059][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2025-04-19 16:02:49.122][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:49.123][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2025-04-19 16:02:49.127][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2025-04-19 16:02:49.129][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2025-04-19 16:02:49.131][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:49.132][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:49.133][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-04-19 16:02:49.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:49.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:49.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:49.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:49.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:49.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:49.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:49.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.157][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:49.157][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.160][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:49.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:49.203][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2025-04-19 16:02:49.204][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.207][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.209][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:49.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:49.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:49.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.219][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:49.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.280][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.293][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:49.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.297][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.300][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.303][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:49.304][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:49.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.316][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:49.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:49.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.319][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:49.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:49.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.322][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:49.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.325][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:49.326][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:49.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.327][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.337][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.340][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.343][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.346][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.347][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.349][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.368][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.369][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.370][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.381][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.384][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.387][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.390][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.390][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.393][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:49.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:49.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:49.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:49.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.412][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:49.412][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:49.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:49.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.425][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:49.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.434][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:49.435][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-04-19 16:02:49.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.447][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.448][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.449][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.453][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:49.454][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:49.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.460][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.466][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.467][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.472][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.473][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.478][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:49.484][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:49.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.490][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.491][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.497][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.497][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.503][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2025-04-19 16:02:49.504][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:49.505][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-04-19 16:02:49.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:49.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:49.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:49.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:49.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:49.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:49.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:49.515][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.521][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.522][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.524][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.527][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:49.528][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:49.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.530][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:49.531][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.533][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.536][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:49.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:49.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.539][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.540][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:49.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:49.572][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2025-04-19 16:02:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.577][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:49.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:49.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:49.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:49.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:49.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:49.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.592][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:49.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.653][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.666][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.669][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.672][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.675][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:49.676][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.678][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:49.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.691][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.697][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.698][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.701][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.711][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:49.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:49.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.717][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:49.718][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:49.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:49.723][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.724][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:49.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:49.726][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:49.733][biodb::testThat]
biodb.INFO [2025-04-19 16:02:49.734][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-19 16:02:49.734][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:49.735][biodb::testThat]
biodb.DEBUG[2025-04-19 16:02:49.737][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2025-04-19 16:02:49.737][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2025-04-19 16:02:49.739][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2025-04-19 16:02:49.740][cch$loadFileContent] file.exist = [8]: "FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2025-04-19 16:02:49.771][loadFileContents] Loaded 7 files from cache: [7]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2025-04-19 16:02:49.772][conn$getEntryContent] 7 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:49.773][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:02:49.774][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:02:49.774][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-04-19 16:02:49.775][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-19 16:02:49.780][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.DEBUG[2025-04-19 16:02:49.782][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:49.783][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:49.784][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.TRACE[2025-04-19 16:02:49.918][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml does not exist.
biodb.TRACE[2025-04-19 16:02:49.919][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:02:49.920][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:02:49.921][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml).
biodb.TRACE[2025-04-19 16:02:50.370][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml"
biodb.DEBUG[2025-04-19 16:02:50.374][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:02:50.375][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2025-04-19 16:02:50.376][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2025-04-19 16:02:50.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:50.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:50.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:50.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:50.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:50.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:50.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:50.404][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.410][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.411][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.413][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.416][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.417][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.423][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.424][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.426][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.429][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.432][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.435][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.436][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:50.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:50.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:50.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:50.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:50.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:50.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:50.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:50.486][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.493][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.494][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.499][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.500][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.503][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.506][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.507][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.509][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.512][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.519][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.520][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.523][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:50.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:50.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:50.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:50.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:50.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:50.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:50.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:50.577][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.584][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.585][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.588][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.591][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.592][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.595][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.598][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.599][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.602][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.604][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.606][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.608][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.612][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.613][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.617][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:50.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:50.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:50.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:50.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:50.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:50.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:50.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:50.671][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.672][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.677][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.678][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.681][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.684][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.685][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.688][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.691][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.692][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.695][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.698][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.701][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.704][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.705][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.708][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:50.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:50.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:50.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:50.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:50.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:50.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:50.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:50.792][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.800][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.800][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.804][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.807][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.808][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.811][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.814][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.815][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.819][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.822][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.826][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.829][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.830][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.837][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:50.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:50.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:50.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:50.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:50.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:50.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:50.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:50.885][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.891][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.892][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.895][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.898][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.899][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.901][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.905][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.905][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.907][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.908][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.911][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.912][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.914][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.917][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.918][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.922][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:50.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:50.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:50.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:50.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:50.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:50.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:50.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:50.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:50.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:50.967][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:50.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:50.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.974][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.975][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.976][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.977][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:50.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:50.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.980][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.981][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.984][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:50.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:50.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.987][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.988][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.989][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.991][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:50.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:50.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.993][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:50.997][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:50.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.000][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:51.001][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:51.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.004][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:51.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:51.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:51.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:51.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:51.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:51.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:51.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:51.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:51.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:51.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:51.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:51.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.048][ef$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:51.049][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:51.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.052][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-04-19 16:02:51.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-04-19 16:02:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.055][ef$get] Asked field names are: location.
biodb.TRACE[2025-04-19 16:02:51.055][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-04-19 16:02:51.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.058][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:51.059][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:51.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.061][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-04-19 16:02:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-04-19 16:02:51.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.064][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-04-19 16:02:51.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:51.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.067][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:51.068][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-04-19 16:02:51.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.070][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-04-19 16:02:51.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:51.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:51.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:51.178][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2025-04-19 16:02:51.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:51.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:51.284][biodb::testThat]
biodb.INFO [2025-04-19 16:02:51.284][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-19 16:02:51.285][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:51.286][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:51.288][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:51.289][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:51.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.290][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:51.291][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2025-04-19 16:02:51.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:51.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:51.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:51.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:51.314][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2025-04-19 16:02:51.319][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-04-19 16:02:51.321][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:02:51.322][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:02:51.323][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2025-04-19 16:02:51.414][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2025-04-19 16:02:51.415][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:02:51.416][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:02:51.417][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2025-04-19 16:02:51.477][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:02:51.479][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2025-04-19 16:02:51.482][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2025-04-19 16:02:51.484][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2025-04-19 16:02:51.498][biodb::testThat]
biodb.INFO [2025-04-19 16:02:51.499][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-19 16:02:51.500][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:51.500][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:51.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:51.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:51.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:51.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:51.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:51.546][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-04-19 16:02:51.548][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:51.549][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2025-04-19 16:02:51.550][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:51.551][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2025-04-19 16:02:51.566][biodb::testThat]
biodb.INFO [2025-04-19 16:02:51.567][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-19 16:02:51.568][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:51.569][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.580][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:51.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:51.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:51.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:51.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:51.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:51.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:51.593][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2025-04-19 16:02:51.593][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.596][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.599][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:51.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.605][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:51.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:51.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.608][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:51.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:51.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.610][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:51.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:51.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.615][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.618][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:51.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:51.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.624][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:51.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.627][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:51.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:51.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:51.630][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:51.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:51.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:51.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:51.638][biodb::testThat]
biodb.INFO [2025-04-19 16:02:51.639][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-19 16:02:51.640][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:51.641][biodb::testThat]
biodb.INFO [2025-04-19 16:02:51.650][biodb::testThat]
biodb.INFO [2025-04-19 16:02:51.651][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-19 16:02:51.652][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:51.652][biodb::testThat]
biodb.INFO [2025-04-19 16:02:51.659][biodb::testThat]
biodb.INFO [2025-04-19 16:02:51.660][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-19 16:02:51.660][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:51.661][biodb::testThat]
biodb.DEBUG[2025-04-19 16:02:51.664][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2025-04-19 16:02:54.557][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2025-04-19 16:02:57.392][biodb::testThat]
biodb.INFO [2025-04-19 16:02:57.393][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-19 16:02:57.394][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:57.395][biodb::testThat]
biodb.INFO [2025-04-19 16:02:57.400][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-19 16:02:57.401][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2025-04-19 16:02:57.401][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2025-04-19 16:02:57.402][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-04-19 16:02:57.408][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-04-19 16:02:57.409][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-19 16:02:57.410][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.411][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.412][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-19 16:02:57.416][biodb::testContext]
biodb.INFO [2025-04-19 16:02:57.417][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:02:57.418][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2025-04-19 16:02:57.418][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:02:57.419][biodb::testContext]
biodb.INFO [2025-04-19 16:02:57.421][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:02:57.422][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-19 16:02:57.425][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:57.426][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-19 16:02:57.427][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-19 16:02:57.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.429][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-19 16:02:57.430][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-19 16:02:57.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.433][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-19 16:02:57.433][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-19 16:02:57.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.436][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-19 16:02:57.437][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-19 16:02:57.438][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-19 16:02:57.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.441][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-19 16:02:57.441][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-19 16:02:57.442][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-19 16:02:57.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.445][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-19 16:02:57.446][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-19 16:02:57.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.448][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-19 16:02:57.449][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-19 16:02:57.450][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-19 16:02:57.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.452][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-19 16:02:57.453][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-19 16:02:57.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.456][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-19 16:02:57.456][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-19 16:02:57.457][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-19 16:02:57.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.460][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:02:57.461][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-19 16:02:57.462][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-19 16:02:57.462][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-19 16:02:57.463][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-19 16:02:57.464][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-19 16:02:57.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.467][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-19 16:02:57.467][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-19 16:02:57.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.470][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-19 16:02:57.471][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-19 16:02:57.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.473][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-19 16:02:57.474][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-19 16:02:57.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.477][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-19 16:02:57.478][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-19 16:02:57.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.480][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-19 16:02:57.481][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-19 16:02:57.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.484][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:02:57.485][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-19 16:02:57.501][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-19 16:02:57.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.504][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-19 16:02:57.505][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-19 16:02:57.506][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-19 16:02:57.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.509][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-19 16:02:57.510][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.511][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-19 16:02:57.511][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.512][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:57.513][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.513][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.514][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.515][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.516][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:02:57.517][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:57.517][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.518][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-19 16:02:57.519][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:57.520][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.520][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.521][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:57.521][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:57.521][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:57.521][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:02:57.521][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:02:57.522][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:57.522][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.523][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.524][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:57.525][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.525][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.526][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.527][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.527][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:57.528][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:57.529][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.529][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.530][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-19 16:02:57.532][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.533][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:02:57.533][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.534][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:57.535][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.535][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.536][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.537][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.538][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:02:57.538][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:57.539][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.540][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-19 16:02:57.541][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:57.541][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.542][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.543][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:57.543][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:57.543][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:57.543][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:02:57.543][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:02:57.544][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:57.545][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.545][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.546][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:57.547][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.547][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.548][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.549][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.549][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:57.550][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:57.551][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.552][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.553][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-19 16:02:57.562][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.563][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-19 16:02:57.564][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.564][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:57.565][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.566][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.566][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.567][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.568][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:02:57.569][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:57.570][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.570][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-19 16:02:57.571][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:57.572][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.573][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.573][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.574][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:57.575][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.576][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.576][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:57.577][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.578][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.579][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.580][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.580][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:57.581][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:57.582][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.582][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.583][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-19 16:02:57.585][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.586][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:02:57.586][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.587][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:57.588][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.589][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.589][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.590][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.591][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:02:57.592][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:57.592][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.593][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-19 16:02:57.594][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:57.595][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.596][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.596][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.597][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:02:57.598][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.599][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.600][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:57.600][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.601][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.602][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.602][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.603][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:57.604][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:57.605][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.605][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.607][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:57.607][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.648][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.665][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-19 16:02:57.666][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-19 16:02:57.668][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-19 16:02:57.669][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-19 16:02:57.670][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-19 16:02:57.671][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-19 16:02:57.672][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-19 16:02:57.673][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-19 16:02:57.674][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-19 16:02:57.675][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-19 16:02:57.676][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-19 16:02:57.677][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-19 16:02:57.678][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-19 16:02:57.679][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-19 16:02:57.680][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:02:57.681][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:02:57.682][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-19 16:02:57.683][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-19 16:02:57.684][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-19 16:02:57.686][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-19 16:02:57.687][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-19 16:02:57.688][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-19 16:02:57.689][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-19 16:02:57.690][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-19 16:02:57.691][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-19 16:02:57.692][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-19 16:02:57.693][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-19 16:02:57.694][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-19 16:02:57.695][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-19 16:02:57.696][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-19 16:02:57.697][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-19 16:02:57.698][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-19 16:02:57.700][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-19 16:02:57.701][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-19 16:02:57.702][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-19 16:02:57.703][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-19 16:02:57.704][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-19 16:02:57.705][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-19 16:02:57.706][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-19 16:02:57.707][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-19 16:02:57.708][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-19 16:02:57.709][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-19 16:02:57.710][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-19 16:02:57.711][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-19 16:02:57.712][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-19 16:02:57.713][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:02:57.714][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-19 16:02:57.715][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-19 16:02:57.716][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-19 16:02:57.717][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-19 16:02:57.718][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-19 16:02:57.719][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-19 16:02:57.721][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-19 16:02:57.722][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-19 16:02:57.723][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-19 16:02:57.724][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-19 16:02:57.725][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-19 16:02:57.726][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-19 16:02:57.726][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-19 16:02:57.728][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-19 16:02:57.729][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-19 16:02:57.730][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-19 16:02:57.731][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-19 16:02:57.732][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-19 16:02:57.733][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-19 16:02:57.734][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-19 16:02:57.735][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-19 16:02:57.736][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-19 16:02:57.737][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-19 16:02:57.738][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-19 16:02:57.739][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-19 16:02:57.740][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-19 16:02:57.741][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-19 16:02:57.742][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-19 16:02:57.743][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-19 16:02:57.744][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-19 16:02:57.745][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-19 16:02:57.746][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-19 16:02:57.747][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-19 16:02:57.749][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-19 16:02:57.750][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-19 16:02:57.751][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-19 16:02:57.752][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-19 16:02:57.753][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-19 16:02:57.754][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:02:57.755][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:02:57.755][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.757][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:02:57.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:02:57.843][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-04-19 16:02:57.850][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-04-19 16:02:57.851][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.862][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-04-19 16:02:57.863][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.864][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:57.865][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.866][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.866][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.867][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.868][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-04-19 16:02:57.868][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:57.869][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.870][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-04-19 16:02:57.871][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:57.871][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-04-19 16:02:57.871][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-04-19 16:02:57.872][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.873][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.874][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-19 16:02:57.874][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.875][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.876][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:57.876][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.877][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.878][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.878][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-04-19 16:02:57.878][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-04-19 16:02:57.879][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:57.880][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:57.880][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.881][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.882][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-04-19 16:02:57.883][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.884][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-04-19 16:02:57.885][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.886][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:57.886][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.887][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.888][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.888][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.889][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:02:57.890][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:57.890][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.891][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-04-19 16:02:57.892][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:57.893][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-04-19 16:02:57.893][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-04-19 16:02:57.893][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-04-19 16:02:57.893][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-04-19 16:02:57.893][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-04-19 16:02:57.893][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-04-19 16:02:57.893][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.894][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:57.895][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-19 16:02:57.895][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.896][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.897][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:57.897][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.898][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.899][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.899][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:02:57.899][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:02:57.900][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:57.901][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:57.901][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.902][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.903][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-04-19 16:02:57.905][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.905][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-04-19 16:02:57.906][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.907][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:57.908][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.908][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.909][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.910][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.910][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:02:57.911][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:57.912][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.913][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-04-19 16:02:57.913][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:02:57.915][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.916][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:02:57.916][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:02:57.916][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:02:57.917][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-04-19 16:02:57.917][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.918][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.919][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:57.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.920][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.921][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.921][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:02:57.921][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:02:57.921][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-04-19 16:02:57.922][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:57.923][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:57.923][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.924][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-04-19 16:02:57.925][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-04-19 16:02:57.926][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.927][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-04-19 16:02:57.928][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.929][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:02:57.929][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.930][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.931][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.931][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.932][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:02:57.933][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:02:57.934][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.934][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-04-19 16:02:57.935][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:02:57.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-04-19 16:02:57.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-04-19 16:02:57.936][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:02:57.937][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:02:57.938][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-04-19 16:02:57.939][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.939][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.940][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:02:57.941][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:02:57.941][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:02:57.942][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:02:57.943][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:02:57.943][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:02:57.943][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-04-19 16:02:57.944][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:02:57.944][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:02:57.945][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:02:57.946][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-04-19 16:02:57.947][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-04-19 16:02:57.948][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:02:57.949][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:02:57.950][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-04-19 16:02:57.951][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:02:57.952][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-04-19 16:02:57.958][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2025-04-19 16:02:57.959][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2025-04-19 16:02:57.959][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2025-04-19 16:02:57.961][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-04-19 16:02:57.961][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-04-19 16:02:57.962][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-04-19 16:02:57.963][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-04-19 16:02:57.964][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-04-19 16:02:57.965][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-04-19 16:02:57.966][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-04-19 16:02:57.969][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2025-04-19 16:02:57.972][biodb::testThat]
biodb.INFO [2025-04-19 16:02:57.973][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-19 16:02:57.974][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:57.975][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:57.977][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2025-04-19 16:02:57.977][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:57.980][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:02:57.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:57.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:57.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:57.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:57.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:57.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:57.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:57.992][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:57.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:57.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:57.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:57.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:57.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:57.998][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:57.998][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:57.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.004][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.005][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.006][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.010][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.011][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.016][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.017][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.018][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.022][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.023][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.028][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:02:58.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.030][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.031][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:02:58.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.034][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.041][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:58.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:58.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:58.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:58.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.047][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.048][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.053][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.054][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.056][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.059][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:02:58.060][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.061][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:02:58.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.065][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.066][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.067][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.071][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.072][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.073][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.077][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:02:58.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.092][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:02:58.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.100][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:02:58.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.109][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:02:58.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.117][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:02:58.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:58.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:58.157][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2025-04-19 16:02:58.159][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:58.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:58.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.162][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:58.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:58.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.168][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:58.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:58.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.171][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:58.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:58.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.174][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:58.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:58.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.177][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:58.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:58.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.237][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.238][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.249][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:02:58.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.258][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:02:58.259][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.261][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:02:58.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:02:58.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.279][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:02:58.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:02:58.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.300][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.313][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.316][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.319][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.322][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.323][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.324][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.325][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.340][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.343][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.344][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.369][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.370][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.390][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.391][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.411][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.411][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.431][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.432][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.452][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.452][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.472][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.472][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:58.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:58.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:58.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:58.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:58.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:58.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.492][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:58.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:58.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.494][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:58.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:58.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:58.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:58.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:58.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:58.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:58.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.533][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:58.533][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:58.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:58.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:58.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.545][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.552][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.553][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.560][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.561][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.566][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.567][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.572][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.573][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.578][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.579][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.584][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:58.590][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:58.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.602][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.603][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.608][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.609][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.614][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.615][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.626][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:58.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:58.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.632][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.633][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.638][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.639][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.645][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2025-04-19 16:02:58.646][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:02:58.647][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:02:58.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:58.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:58.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:58.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:58.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:58.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:58.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:58.658][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.664][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.664][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.669][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.670][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.675][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.676][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.681][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.682][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.687][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.688][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.693][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:02:58.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.695][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.696][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:02:58.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.699][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:58.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:58.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:58.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:58.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.716][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.717][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.719][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.722][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:02:58.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:02:58.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.728][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.729][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.734][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.735][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:58.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.740][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:02:58.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:58.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.749][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:02:58.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:58.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.757][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:02:58.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:58.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.766][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:02:58.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:58.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.775][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:02:58.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:58.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:58.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:58.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:58.815][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2025-04-19 16:02:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:58.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.820][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:58.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:58.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:58.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:58.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.826][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:58.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:58.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.829][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:58.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:58.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:58.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:58.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:58.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:58.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:58.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.897][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:58.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:58.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.917][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.918][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:58.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.937][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.938][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:58.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.958][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:58.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:58.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.970][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.973][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.976][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.978][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.979][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.981][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:58.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:58.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:58.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:58.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:58.999][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.000][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.022][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.022][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.085][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.086][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.107][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.107][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.128][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.129][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.156][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.157][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.179][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.180][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.202][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.215][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.217][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.222][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.223][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.229][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.230][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.235][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.236][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.242][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.242][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.248][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.249][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.255][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:59.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:59.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.262][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.264][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.269][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.270][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.276][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:59.276][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:59.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.282][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:59.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:59.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.289][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.290][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.296][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.297][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.303][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.303][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.310][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.310][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.312][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:59.319][biodb::testThat]
biodb.INFO [2025-04-19 16:02:59.320][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-19 16:02:59.321][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:59.322][biodb::testThat]
biodb.DEBUG[2025-04-19 16:02:59.323][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2025-04-19 16:02:59.325][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:02:59.326][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2025-04-19 16:02:59.328][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-04-19 16:02:59.330][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2025-04-19 16:02:59.331][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:02:59.332][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-04-19 16:02:59.333][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:02:59.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:59.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:59.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:59.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:59.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:59.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:59.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:59.345][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.352][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.353][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.359][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.360][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.361][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.365][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.366][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.372][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.373][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.379][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.380][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.386][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:02:59.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.390][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:02:59.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.393][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:59.394][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:59.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:59.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:59.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.407][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.409][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.413][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:59.414][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:59.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.416][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.417][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:59.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:59.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.420][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:02:59.421][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:59.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.423][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:02:59.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:59.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.427][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.428][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.429][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.434][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.435][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.441][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:02:59.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.451][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:02:59.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:02:59.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.476][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:02:59.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.486][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:02:59.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:59.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:02:59.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:02:59.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:02:59.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:02:59.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:02:59.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:02:59.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:02:59.532][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.533][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.539][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.540][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.546][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.547][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.553][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.554][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.560][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.561][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.567][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.568][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.574][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:02:59.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.578][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:02:59.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.581][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:59.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:59.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:02:59.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:02:59.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.588][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:02:59.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:02:59.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.594][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:02:59.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.601][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:59.601][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:59.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.604][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:02:59.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:02:59.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.607][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:02:59.608][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:59.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:02:59.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:59.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.614][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.615][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:02:59.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.621][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.622][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:02:59.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.628][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:02:59.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:02:59.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.638][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:02:59.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:02:59.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.648][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:02:59.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:02:59.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:02:59.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:02:59.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.667][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:02:59.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:02:59.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:02:59.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:02:59.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:02:59.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:59.723][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2025-04-19 16:02:59.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:59.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:59.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:59.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:59.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:59.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:59.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:59.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:02:59.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:59.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:02:59.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:59.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:02:59.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:59.759][biodb::testThat]
biodb.INFO [2025-04-19 16:02:59.760][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-19 16:02:59.760][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:59.761][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:59.764][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.766][ef$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:59.767][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2025-04-19 16:02:59.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:59.790][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2025-04-19 16:02:59.795][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-04-19 16:02:59.797][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:59.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-04-19 16:02:59.800][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:59.801][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-04-19 16:02:59.803][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2025-04-19 16:02:59.814][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:59.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:02:59.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:02:59.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.820][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:59.823][biodb::testThat]
biodb.INFO [2025-04-19 16:02:59.824][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-19 16:02:59.825][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:59.826][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:02:59.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:02:59.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:02:59.868][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-04-19 16:02:59.870][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:02:59.871][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-04-19 16:02:59.872][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:02:59.873][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2025-04-19 16:02:59.889][biodb::testThat]
biodb.INFO [2025-04-19 16:02:59.890][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-19 16:02:59.891][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:59.891][biodb::testThat]
biodb.TRACE[2025-04-19 16:02:59.900][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:59.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:59.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.904][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:59.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:59.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:59.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:59.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.911][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:59.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:59.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.914][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:59.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:59.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:59.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:59.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.920][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:59.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:59.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.925][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:59.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:59.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.928][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:02:59.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:02:59.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:59.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:02:59.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.935][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:59.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:59.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.938][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:02:59.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:02:59.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.941][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:59.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:02:59.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:02:59.944][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:59.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:02:59.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:02:59.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:02:59.953][biodb::testThat]
biodb.INFO [2025-04-19 16:02:59.953][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-19 16:02:59.954][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:59.955][biodb::testThat]
biodb.INFO [2025-04-19 16:02:59.962][biodb::testThat]
biodb.INFO [2025-04-19 16:02:59.963][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-19 16:02:59.963][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:59.964][biodb::testThat]
biodb.INFO [2025-04-19 16:02:59.972][biodb::testThat]
biodb.INFO [2025-04-19 16:02:59.972][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-19 16:02:59.973][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:02:59.974][biodb::testThat]
biodb.DEBUG[2025-04-19 16:02:59.977][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2025-04-19 16:03:00.181][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2025-04-19 16:03:00.395][biodb::testThat]
biodb.INFO [2025-04-19 16:03:00.396][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-19 16:03:00.397][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:00.397][biodb::testThat]
biodb.DEBUG[2025-04-19 16:03:00.474][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2025-04-19 16:03:00.545][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:00.546][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:00.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.549][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.551][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:00.553][biodb::testThat]
biodb.INFO [2025-04-19 16:03:00.554][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-04-19 16:03:00.554][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:00.555][biodb::testThat]
biodb.TRACE[2025-04-19 16:03:00.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:00.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:00.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:00.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:00.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:00.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:00.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:00.656][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-04-19 16:03:00.659][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:00.660][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-04-19 16:03:00.661][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:00.662][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-04-19 16:03:00.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-04-19 16:03:00.720][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:00.722][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-04-19 16:03:00.723][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:00.724][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2025-04-19 16:03:00.736][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:00.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:00.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:00.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:00.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:00.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:00.764][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:00.768][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:00.769][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-04-19 16:03:00.771][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:00.772][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-04-19 16:03:00.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-04-19 16:03:00.787][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:00.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2025-04-19 16:03:00.789][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:00.791][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2025-04-19 16:03:01.018][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-04-19 16:03:01.021][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:01.022][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2025-04-19 16:03:01.023][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:01.024][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2025-04-19 16:03:01.042][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-04-19 16:03:01.045][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:01.046][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2025-04-19 16:03:01.047][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:01.049][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2025-04-19 16:03:01.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:01.084][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:01.086][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:01.087][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2025-04-19 16:03:01.088][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:01.090][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2025-04-19 16:03:01.102][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-04-19 16:03:01.105][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:01.106][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2025-04-19 16:03:01.107][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:01.108][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2025-04-19 16:03:01.122][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-04-19 16:03:01.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:01.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2025-04-19 16:03:01.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:01.128][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2025-04-19 16:03:01.147][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-04-19 16:03:01.150][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:01.151][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2025-04-19 16:03:01.152][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:01.154][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2025-04-19 16:03:01.170][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:01.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:01.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:01.180][biodb::testThat]
biodb.INFO [2025-04-19 16:03:01.181][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-04-19 16:03:01.182][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:01.182][biodb::testThat]
biodb.TRACE[2025-04-19 16:03:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:01.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.188][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:01.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:01.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:01.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:01.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:01.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:01.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:01.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:01.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:01.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:01.232][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:01.235][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:01.236][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-04-19 16:03:01.237][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:01.238][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-04-19 16:03:01.240][private$loadEntries] Creating entries from ids [3]: "172914375, 172899831, 172859178".
biodb.DEBUG[2025-04-19 16:03:01.241][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-04-19 16:03:01.242][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172914375, 172899831, 172859178".
biodb.TRACE[2025-04-19 16:03:01.243][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-04-19 16:03:01.250][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172914375.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172899831.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172859178.xml".
biodb.DEBUG[2025-04-19 16:03:01.251][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:01.252][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-04-19 16:03:01.253][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:01.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:01.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:01.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:01.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:01.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:01.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:01.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:01.264][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.267][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.270][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.271][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.277][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.277][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.283][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.284][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.289][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.290][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.295][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.296][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.307][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:01.308][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.310][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.311][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:01.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.314][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:01.315][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:01.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:01.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:01.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:01.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:01.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:01.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:01.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.327][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.333][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:01.334][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:01.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.336][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:01.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:01.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.340][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:01.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:01.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.346][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.347][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.352][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.353][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.358][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:01.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.366][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:01.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.376][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:01.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.386][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:01.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.395][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:01.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:01.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:01.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:01.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:01.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:01.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:01.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:01.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:01.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:01.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:01.438][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.445][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.445][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.451][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.451][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.457][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.457][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.463][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.463][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.469][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.469][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.475][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:01.475][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.478][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:01.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.481][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:01.481][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:01.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:01.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:01.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:01.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:01.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:01.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:01.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.493][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.493][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.499][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:01.499][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:01.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.502][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:01.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:01.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.505][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:01.506][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:01.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.512][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.512][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.518][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.519][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.525][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:01.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.534][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:01.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.542][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:01.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:01.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.565][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:01.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:01.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:01.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:01.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:01.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:01.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:01.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:01.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:01.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:01.609][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.616][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.617][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.619][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.623][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.623][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.629][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.629][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.635][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.635][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.641][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.641][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.647][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:01.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.650][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:01.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:01.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.653][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:01.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:01.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:01.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:01.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:01.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:01.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:01.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.666][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.666][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:01.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.672][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:01.673][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:01.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.675][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:01.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:01.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.678][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:01.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.680][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:01.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:01.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.685][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.685][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:01.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.691][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.692][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:01.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.697][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:01.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:01.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.705][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:01.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:01.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.714][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:01.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:01.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.723][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:01.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:01.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.732][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:01.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:01.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:01.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:01.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:01.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:01.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:01.798][self$createEntryFromContent] Accession numbers: 172914375, 172899831, 172859178.
biodb.DEBUG[2025-04-19 16:03:01.798][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:01.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:01.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:01.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:01.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:01.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:01.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:01.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:01.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.814][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.815][private$selectFields]
biodb.TRACE[2025-04-19 16:03:01.816][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:01.816][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:01.817][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.818][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.818][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.820][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.821][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.823][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.824][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.827][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:01.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914375].
biodb.DEBUG[2025-04-19 16:03:01.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:01.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:01.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:01.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:01.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:01.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:01.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:01.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.858][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.858][private$selectFields]
biodb.TRACE[2025-04-19 16:03:01.859][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:01.860][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:01.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.861][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.864][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.867][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.868][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.872][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:01.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172899831].
biodb.DEBUG[2025-04-19 16:03:01.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:01.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:01.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:01.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:01.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:01.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:01.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:01.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.899][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.900][private$selectFields]
biodb.TRACE[2025-04-19 16:03:01.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:01.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:01.903][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.903][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.909][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.910][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.911][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:01.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.914][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:01.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:01.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:01.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:01.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172859178].
biodb.DEBUG[2025-04-19 16:03:01.926][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:01.926][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:01.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:01.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:01.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:01.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:01.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:01.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:01.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:01.943][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:01.945][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:01.946][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:01.947][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:02.004][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:02.004][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:02.006][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:02.007][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:02.146][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:02.148][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2025-04-19 16:03:02.151][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2025-04-19 16:03:02.153][private$loadEntries] Creating entries from ids [3]: "172908038, 172886345, 172862279".
biodb.DEBUG[2025-04-19 16:03:02.154][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-04-19 16:03:02.155][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172908038, 172886345, 172862279".
biodb.TRACE[2025-04-19 16:03:02.156][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-04-19 16:03:02.157][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:02.158][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:02.159][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:02.159][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:02.160][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-04-19 16:03:02.161][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-04-19 16:03:02.163][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172908038,172886345,172862279/XML".
biodb.DEBUG[2025-04-19 16:03:02.164][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:02.165][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:02.166][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172908038,172886345,172862279/XML".
biodb.TRACE[2025-04-19 16:03:02.323][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172908038,172886345,172862279/XML).
biodb.TRACE[2025-04-19 16:03:02.503][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172908038.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172886345.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172862279.xml"
biodb.DEBUG[2025-04-19 16:03:02.506][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:02.507][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-04-19 16:03:02.508][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:02.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:02.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:02.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:02.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:02.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:02.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:02.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:02.520][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.521][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.527][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.527][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.533][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.534][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.540][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.541][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.546][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.547][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.553][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.554][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.559][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:02.560][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.562][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:02.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.565][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:02.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:02.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:02.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:02.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:02.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:02.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.588][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.594][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:02.595][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:02.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.597][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:02.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:02.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.600][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:02.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:02.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:02.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:02.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.606][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.607][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.613][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.613][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.618][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:02.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.627][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:02.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.636][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:02.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.644][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:02.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.654][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:02.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:02.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:02.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:02.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:02.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:02.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:02.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:02.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:02.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:02.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:02.696][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.702][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.703][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.708][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.709][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.715][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.716][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.721][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.722][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.727][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.728][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.730][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.733][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:02.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.737][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.740][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:02.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:02.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:02.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:02.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.746][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:02.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:02.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.748][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:02.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:02.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.758][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:02.759][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:02.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.761][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:02.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:02.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:02.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:02.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.768][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.769][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.774][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.775][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.781][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:02.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.789][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:02.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.799][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:02.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.809][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:02.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.819][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:02.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:02.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:02.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:02.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:02.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:02.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:02.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:02.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:02.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:02.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:02.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:02.869][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.872][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:02.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:02.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.876][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.877][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.882][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.883][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.889][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.890][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.895][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.896][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.902][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.902][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.908][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:02.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.911][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:02.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:02.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.915][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:02.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:02.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:02.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:02.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.922][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:02.922][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:02.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:02.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:02.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:02.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.934][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:02.935][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:02.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.938][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:02.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:02.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:02.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:02.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.944][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.945][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:02.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.951][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.951][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.953][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:02.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.957][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:02.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:02.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.967][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:02.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:02.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.976][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:02.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:02.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.986][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:02.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:02.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:02.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:03.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:03.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:03.074][self$createEntryFromContent] Accession numbers: 172908038, 172886345, 172862279.
biodb.DEBUG[2025-04-19 16:03:03.098][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:03.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:03.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.131][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.132][private$selectFields]
biodb.TRACE[2025-04-19 16:03:03.132][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:03.133][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:03.134][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.138][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.141][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.141][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.142][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.146][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:03.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.156][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:03.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:03.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.172][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.172][private$selectFields]
biodb.TRACE[2025-04-19 16:03:03.173][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:03.174][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:03.175][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.176][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.176][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.178][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.179][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.181][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.182][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.183][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.184][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.185][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.186][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:03.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.196][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172886345].
biodb.DEBUG[2025-04-19 16:03:03.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:03.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.213][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.213][private$selectFields]
biodb.TRACE[2025-04-19 16:03:03.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:03.215][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:03.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.223][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.223][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.224][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.225][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.227][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:03.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.238][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862279].
biodb.DEBUG[2025-04-19 16:03:03.239][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:03.240][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:03.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:03.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:03.373][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:03.375][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:03.376][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-04-19 16:03:03.378][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:03.379][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-04-19 16:03:03.380][private$loadEntries] Creating entries from ids [3]: "172890878, 172878087, 159708966".
biodb.DEBUG[2025-04-19 16:03:03.381][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-04-19 16:03:03.382][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172890878, 172878087, 159708966".
biodb.TRACE[2025-04-19 16:03:03.383][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-04-19 16:03:03.386][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172890878.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172878087.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/159708966.xml".
biodb.DEBUG[2025-04-19 16:03:03.387][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:03.388][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-04-19 16:03:03.389][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:03.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:03.401][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.402][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.404][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.408][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.409][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.410][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.414][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.415][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.421][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.422][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.428][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.429][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.434][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.435][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.437][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.441][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:03.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.445][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:03.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.448][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:03.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:03.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:03.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:03.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:03.455][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:03.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:03.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:03.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.461][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.462][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.464][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.468][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:03.469][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:03.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.472][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:03.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:03.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.475][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:03.476][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:03.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.483][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.484][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.489][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.490][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.496][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:03.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.505][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:03.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:03.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.525][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:03.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.535][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:03.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:03.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:03.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:03.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:03.585][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.593][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.593][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.599][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.600][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.607][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.607][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.614][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.615][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.621][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.622][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.623][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.628][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:03.629][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.631][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:03.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.635][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:03.635][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:03.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.642][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:03.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:03.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:03.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:03.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.651][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.662][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:03.663][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:03.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.666][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:03.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.673][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.673][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.679][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.680][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.686][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:03.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.696][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:03.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.705][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:03.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.715][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:03.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.724][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:03.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:03.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:03.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:03.769][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.770][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.776][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.777][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.783][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.784][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.790][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.791][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.797][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.797][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.799][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.803][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.804][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.810][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:03.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.813][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:03.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.816][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:03.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:03.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:03.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:03.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:03.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:03.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:03.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:03.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:03.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.836][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:03.836][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:03.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.839][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:03.840][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:03.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:03.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.845][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.846][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:03.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.852][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.853][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:03.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.858][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:03.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.867][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:03.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:03.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.877][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:03.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.886][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:03.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:03.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.895][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:03.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:03.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:03.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:03.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:03.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:03.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:03.963][self$createEntryFromContent] Accession numbers: 172890878, 172878087, 159708966.
biodb.DEBUG[2025-04-19 16:03:03.964][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:03.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:03.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:03.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:03.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:03.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:03.973][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:03.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:03.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.981][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.982][private$selectFields]
biodb.TRACE[2025-04-19 16:03:03.982][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:03.983][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:03.984][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.985][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.986][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.991][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.992][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:03.992][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.995][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.995][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:03.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:03.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:03.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172890878].
biodb.DEBUG[2025-04-19 16:03:04.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.039][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:04.040][private$selectFields]
biodb.TRACE[2025-04-19 16:03:04.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:04.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:04.042][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:04.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.046][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.047][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.049][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:04.050][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:04.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.052][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.053][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.054][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:04.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.065][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172878087].
biodb.DEBUG[2025-04-19 16:03:04.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.082][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:04.082][private$selectFields]
biodb.TRACE[2025-04-19 16:03:04.083][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:04.084][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:04.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:04.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.089][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.092][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:04.093][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:04.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.097][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:04.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.107][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-04-19 16:03:04.108][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:04.109][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:04.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:04.125][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:04.127][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:04.128][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:04.129][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:04.187][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:04.188][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:04.190][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:04.191][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:04.262][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:04.264][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2025-04-19 16:03:04.267][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2025-04-19 16:03:04.269][private$loadEntries] Creating entries from ids [2]: "172905633, 172898073".
biodb.DEBUG[2025-04-19 16:03:04.270][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:03:04.272][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172905633, 172898073".
biodb.TRACE[2025-04-19 16:03:04.273][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-04-19 16:03:04.274][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:04.275][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:04.276][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:04.276][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:04.277][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-04-19 16:03:04.291][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-04-19 16:03:04.293][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172905633,172898073/XML".
biodb.DEBUG[2025-04-19 16:03:04.295][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:04.295][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:04.296][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172905633,172898073/XML".
biodb.TRACE[2025-04-19 16:03:04.410][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172905633,172898073/XML).
biodb.TRACE[2025-04-19 16:03:04.641][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172905633.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172898073.xml"
biodb.DEBUG[2025-04-19 16:03:04.644][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:04.645][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-04-19 16:03:04.646][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:04.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.657][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:04.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:04.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.660][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:04.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:04.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.664][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.665][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.667][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.671][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.672][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.673][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.677][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.678][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.684][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.685][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.686][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.690][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.691][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.707][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:04.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:04.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.710][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:04.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:04.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.713][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:04.714][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:04.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:04.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:04.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:04.720][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:04.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:04.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:04.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:04.727][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:04.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:04.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:04.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.733][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:04.734][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:04.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.735][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.736][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:04.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:04.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.740][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:04.740][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:04.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.747][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:04.747][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:04.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:04.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:04.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.753][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:04.754][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:04.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.756][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:04.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:04.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.760][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:04.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.770][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:04.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.780][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:04.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.789][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:04.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.798][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:04.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:04.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:04.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:04.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:04.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:04.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:04.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:04.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:04.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:04.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:04.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:04.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:04.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:04.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:04.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:04.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:04.842][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:04.843][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:04.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:04.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:04.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.849][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.850][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.856][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.857][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.862][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.863][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.865][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.869][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.870][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.875][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.876][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.882][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:04.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:04.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.884][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.885][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:04.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:04.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.888][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:04.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:04.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:04.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:04.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.895][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:04.896][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:04.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:04.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:04.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:04.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:04.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.904][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:04.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:04.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.908][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:04.909][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:04.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.912][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:04.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:04.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:04.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.918][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:04.919][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:04.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.921][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:04.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:04.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.925][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:04.926][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:04.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:04.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:04.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.932][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:04.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:04.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.942][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:04.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:04.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.952][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:04.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:04.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.961][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:04.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:04.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.971][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:04.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:04.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:04.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:04.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:04.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:04.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:04.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:04.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:04.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:05.032][self$createEntryFromContent] Accession numbers: 172905633, 172898073.
biodb.DEBUG[2025-04-19 16:03:05.033][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:05.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.075][private$selectFields]
biodb.TRACE[2025-04-19 16:03:05.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:05.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:05.077][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.078][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.093][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.097][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:05.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.107][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:05.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.123][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.124][private$selectFields]
biodb.TRACE[2025-04-19 16:03:05.124][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:05.125][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:05.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.133][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.134][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.138][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:05.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172905633].
biodb.DEBUG[2025-04-19 16:03:05.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:05.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.165][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.166][private$selectFields]
biodb.TRACE[2025-04-19 16:03:05.166][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:05.167][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:05.168][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.169][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.173][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.174][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.175][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.176][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.179][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.180][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:05.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.191][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172898073].
biodb.DEBUG[2025-04-19 16:03:05.192][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:05.192][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:05.200][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:05.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.204][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:05.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:05.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:05.210][biodb::testThat]
biodb.INFO [2025-04-19 16:03:05.211][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-04-19 16:03:05.211][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:05.212][biodb::testThat]
biodb.TRACE[2025-04-19 16:03:05.215][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:05.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:05.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:05.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:05.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.255][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:05.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:05.286][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:05.289][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:05.290][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2025-04-19 16:03:05.291][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:05.293][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2025-04-19 16:03:05.294][private$loadEntries] Creating entries from ids [2]: "172828488, 172781794".
biodb.DEBUG[2025-04-19 16:03:05.295][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:03:05.296][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172828488, 172781794".
biodb.TRACE[2025-04-19 16:03:05.297][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-04-19 16:03:05.300][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172828488.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172781794.xml".
biodb.DEBUG[2025-04-19 16:03:05.301][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:05.302][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-04-19 16:03:05.303][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:05.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:05.314][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.315][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.321][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.322][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.328][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.329][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.334][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.335][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.341][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.342][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.348][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.349][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.354][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:05.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:05.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.358][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:05.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:05.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.361][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:05.361][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:05.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:05.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:05.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.367][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:05.368][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:05.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:05.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:05.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.373][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:05.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:05.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:05.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.380][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:05.380][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:05.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.383][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:05.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:05.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.386][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:05.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:05.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.392][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:05.393][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:05.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.395][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:05.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:05.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.399][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:05.400][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:05.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:05.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.406][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:05.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.415][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:05.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.424][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:05.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.434][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:05.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.444][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:05.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:05.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:05.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:05.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:05.489][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.490][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.496][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.496][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.502][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.503][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.509][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.510][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.516][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.516][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.522][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.523][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.529][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:05.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:05.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.532][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:05.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.535][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:05.536][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:05.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:05.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:05.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.548][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:05.549][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:05.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.550][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:05.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:05.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:05.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:05.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:05.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.561][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:05.562][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:05.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.564][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:05.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:05.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:05.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.571][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:05.572][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:05.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:05.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:05.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.577][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:05.578][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:05.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:05.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:05.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:05.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:05.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.593][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:05.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:05.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.603][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:05.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:05.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.612][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:05.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:05.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.622][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:05.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:05.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:05.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:05.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:05.674][self$createEntryFromContent] Accession numbers: 172828488, 172781794.
biodb.DEBUG[2025-04-19 16:03:05.675][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:05.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:05.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.692][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.693][private$selectFields]
biodb.TRACE[2025-04-19 16:03:05.694][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:05.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:05.695][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.696][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.697][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.702][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.703][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.704][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.707][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:05.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.717][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172859178].
biodb.DEBUG[2025-04-19 16:03:05.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:05.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.733][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.734][private$selectFields]
biodb.TRACE[2025-04-19 16:03:05.735][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:05.736][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:05.736][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.740][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.741][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.742][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.743][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.744][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.747][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.747][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:05.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.757][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172828488].
biodb.DEBUG[2025-04-19 16:03:05.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:05.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.773][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.774][private$selectFields]
biodb.TRACE[2025-04-19 16:03:05.775][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:05.775][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:05.776][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.777][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.778][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.783][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:05.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.787][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:05.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:05.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:05.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172781794].
biodb.DEBUG[2025-04-19 16:03:05.798][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:05.799][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:05.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:05.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:05.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:05.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:05.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:05.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:05.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:05.819][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:05.822][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:05.822][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:05.824][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:05.880][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:05.881][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:05.882][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:05.884][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:05.947][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:05.949][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2025-04-19 16:03:05.952][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2025-04-19 16:03:05.954][private$loadEntries] Creating entries from ids [1]: "172849147".
biodb.DEBUG[2025-04-19 16:03:05.955][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:05.956][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172849147".
biodb.TRACE[2025-04-19 16:03:05.957][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:05.958][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:05.959][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:05.959][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:05.961][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:05.961][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-04-19 16:03:05.962][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-19 16:03:05.963][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172849147/XML".
biodb.DEBUG[2025-04-19 16:03:05.965][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:05.966][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:05.967][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172849147/XML".
biodb.TRACE[2025-04-19 16:03:06.108][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172849147/XML).
biodb.TRACE[2025-04-19 16:03:06.232][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172849147.xml"
biodb.DEBUG[2025-04-19 16:03:06.233][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:06.234][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:06.235][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:06.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:06.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:06.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:06.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:06.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:06.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:06.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:06.247][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.254][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.254][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.260][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.260][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.262][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.266][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.267][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.268][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.273][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.273][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.279][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.280][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.286][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:06.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.289][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:06.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.292][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:06.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:06.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:06.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:06.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:06.299][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:06.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:06.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:06.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.305][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.306][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.311][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:06.312][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:06.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.313][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.314][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:06.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:06.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.321][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.322][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.327][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.328][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.334][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.343][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:06.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:06.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.361][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:06.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.370][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:06.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:06.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:06.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:06.413][self$createEntryFromContent] Accession numbers: 172849147.
biodb.DEBUG[2025-04-19 16:03:06.414][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:06.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:06.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:06.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:06.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:06.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:06.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:06.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:06.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.431][private$selectFields]
biodb.TRACE[2025-04-19 16:03:06.432][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:06.433][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:06.433][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.435][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.440][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.441][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.444][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:06.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.464][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:06.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:06.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:06.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:06.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:06.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:06.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:06.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:06.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.481][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.482][private$selectFields]
biodb.TRACE[2025-04-19 16:03:06.483][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:06.484][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:06.484][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.485][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.488][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.491][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.491][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.492][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.493][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.494][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.496][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:06.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.506][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172886345].
biodb.DEBUG[2025-04-19 16:03:06.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:06.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:06.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:06.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:06.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:06.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:06.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:06.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.523][private$selectFields]
biodb.TRACE[2025-04-19 16:03:06.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:06.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:06.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.532][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.532][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.536][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:06.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172849147].
biodb.DEBUG[2025-04-19 16:03:06.547][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:06.548][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:06.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:06.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:06.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:06.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:06.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:06.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:06.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:06.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:06.595][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:06.598][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:06.599][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2025-04-19 16:03:06.600][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:06.602][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2025-04-19 16:03:06.603][private$loadEntries] Creating entries from ids [2]: "172860172, 172858129".
biodb.DEBUG[2025-04-19 16:03:06.604][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:03:06.605][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172860172, 172858129".
biodb.TRACE[2025-04-19 16:03:06.606][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-04-19 16:03:06.608][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172860172.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172858129.xml".
biodb.DEBUG[2025-04-19 16:03:06.609][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:06.610][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-04-19 16:03:06.611][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:06.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:06.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:06.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:06.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:06.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:06.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:06.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:06.622][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.628][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.629][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.635][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.635][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.641][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.641][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.647][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.648][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.653][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.654][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.659][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:06.660][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.663][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:06.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.666][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:06.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:06.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:06.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:06.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:06.673][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:06.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:06.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:06.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.679][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.680][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.685][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:06.686][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:06.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.689][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:06.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:06.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.692][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:06.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:06.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.698][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.699][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.704][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.705][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.708][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.711][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:06.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.720][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:06.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.730][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:06.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.745][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:06.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.754][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:06.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:06.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:06.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:06.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:06.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:06.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:06.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:06.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:06.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:06.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:06.798][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.805][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.805][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.807][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.811][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.812][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.818][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.818][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.824][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.825][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.826][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.830][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.831][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.837][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:06.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.840][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:06.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:06.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.843][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:06.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:06.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.846][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:06.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:06.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.849][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:06.850][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:06.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:06.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:06.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.862][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:06.863][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:06.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.865][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:06.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:06.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.868][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:06.869][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:06.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:06.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.874][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.875][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:06.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.880][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.881][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:06.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.887][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:06.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:06.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.896][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:06.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:06.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.905][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:06.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:06.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.914][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:06.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.923][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:06.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:06.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:06.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:06.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:06.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:06.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:06.974][self$createEntryFromContent] Accession numbers: 172860172, 172858129.
biodb.DEBUG[2025-04-19 16:03:06.975][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:06.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:06.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:06.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:06.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:06.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:06.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:06.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:06.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:06.992][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:06.993][private$selectFields]
biodb.TRACE[2025-04-19 16:03:06.993][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:06.994][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:07.000][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.005][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.008][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.009][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.010][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.012][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.013][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:07.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172890878].
biodb.DEBUG[2025-04-19 16:03:07.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:07.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:07.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:07.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:07.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:07.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:07.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:07.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.038][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.039][private$selectFields]
biodb.TRACE[2025-04-19 16:03:07.040][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:07.041][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:07.041][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.045][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.046][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.048][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.049][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.053][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:07.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860172].
biodb.DEBUG[2025-04-19 16:03:07.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:07.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:07.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:07.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:07.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:07.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:07.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:07.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.078][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.078][private$selectFields]
biodb.TRACE[2025-04-19 16:03:07.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:07.080][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:07.081][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.088][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.089][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.092][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:07.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172858129].
biodb.DEBUG[2025-04-19 16:03:07.102][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:07.103][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:07.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:07.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:07.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:07.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:07.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:07.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:07.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:07.117][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:07.120][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:07.120][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:07.122][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:07.177][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:07.178][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:07.179][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:07.180][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:07.247][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:07.248][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2025-04-19 16:03:07.251][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2025-04-19 16:03:07.253][private$loadEntries] Creating entries from ids [2]: "172860061, 172846412".
biodb.DEBUG[2025-04-19 16:03:07.254][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:03:07.255][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172860061, 172846412".
biodb.TRACE[2025-04-19 16:03:07.256][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-04-19 16:03:07.257][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:07.258][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:07.258][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:07.259][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:07.260][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-04-19 16:03:07.261][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-04-19 16:03:07.262][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172860061,172846412/XML".
biodb.DEBUG[2025-04-19 16:03:07.264][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:07.265][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:07.266][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172860061,172846412/XML".
biodb.TRACE[2025-04-19 16:03:07.411][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172860061,172846412/XML).
biodb.TRACE[2025-04-19 16:03:07.594][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172860061.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172846412.xml"
biodb.DEBUG[2025-04-19 16:03:07.596][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:07.597][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-04-19 16:03:07.598][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:07.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:07.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:07.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:07.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:07.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:07.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:07.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:07.609][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.616][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.616][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.622][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.623][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.628][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.629][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.635][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.635][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.641][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.642][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.647][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:07.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.650][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.651][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:07.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.654][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:07.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:07.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.656][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:07.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:07.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:07.661][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:07.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:07.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:07.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.666][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.672][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:07.673][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:07.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.676][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:07.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:07.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.679][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:07.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:07.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.685][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:07.685][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:07.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:07.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:07.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.691][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:07.692][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:07.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:07.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:07.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.697][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:07.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.716][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:07.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.726][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:07.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.735][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.745][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:07.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:07.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:07.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:07.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:07.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:07.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:07.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:07.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:07.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:07.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:07.788][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.789][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.795][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.795][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.801][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.802][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.807][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.808][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.814][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.815][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.821][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.821][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.827][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:07.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.831][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:07.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:07.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.834][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:07.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:07.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:07.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:07.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.841][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:07.842][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:07.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:07.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:07.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.848][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:07.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.854][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:07.855][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:07.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.858][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:07.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:07.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.861][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:07.862][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:07.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:07.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.867][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:07.868][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:07.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:07.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:07.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.874][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:07.875][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:07.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:07.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:07.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.880][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:07.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:07.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.889][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:07.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:07.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.898][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:07.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:07.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.908][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:07.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:07.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.916][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:07.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:07.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:07.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:07.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:07.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:07.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:07.969][self$createEntryFromContent] Accession numbers: 172860061, 172846412.
biodb.DEBUG[2025-04-19 16:03:07.970][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:07.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:07.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:07.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:07.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:07.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:07.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:07.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:07.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:07.993][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.994][private$selectFields]
biodb.TRACE[2025-04-19 16:03:07.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:07.995][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:07.996][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:07.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:07.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:07.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.003][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.004][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.005][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.008][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.018][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:08.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.034][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.035][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.036][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.037][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.041][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.042][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.044][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.045][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.046][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.047][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.049][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.059][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172860061].
biodb.DEBUG[2025-04-19 16:03:08.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.075][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.076][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.077][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.078][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.085][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.089][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172846412].
biodb.DEBUG[2025-04-19 16:03:08.099][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:08.100][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:08.108][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:08.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:08.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.111][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:08.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:08.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:08.117][biodb::testThat]
biodb.INFO [2025-04-19 16:03:08.118][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-04-19 16:03:08.118][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:08.119][biodb::testThat]
biodb.TRACE[2025-04-19 16:03:08.121][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:08.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:08.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.124][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:08.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:08.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:08.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:08.168][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:08.171][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:08.172][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-04-19 16:03:08.173][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:08.174][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-04-19 16:03:08.175][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:08.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.192][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.193][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.195][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.201][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.202][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.205][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.206][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914375].
biodb.DEBUG[2025-04-19 16:03:08.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.233][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.233][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.234][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.235][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.235][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.236][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.237][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.242][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.243][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.244][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.247][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172899831].
biodb.DEBUG[2025-04-19 16:03:08.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.280][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.281][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.282][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.282][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.283][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.288][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.290][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.294][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.304][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172859178].
biodb.DEBUG[2025-04-19 16:03:08.305][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:08.306][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:08.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:08.321][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:08.323][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:08.324][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-04-19 16:03:08.325][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:08.327][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-04-19 16:03:08.328][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:08.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.344][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.345][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.346][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.349][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.350][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.353][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.355][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.358][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.359][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:08.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.385][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.386][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.388][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.389][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.390][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.395][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.396][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.396][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.397][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.399][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172886345].
biodb.DEBUG[2025-04-19 16:03:08.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.426][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.427][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.428][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.429][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.432][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.433][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.435][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.437][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.441][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862279].
biodb.DEBUG[2025-04-19 16:03:08.452][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:08.453][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:08.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:08.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:08.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:08.512][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:08.514][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:08.515][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-04-19 16:03:08.516][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:08.517][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-04-19 16:03:08.519][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:08.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.541][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.542][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.543][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.544][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.544][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.545][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.551][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.552][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.553][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.556][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.567][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172890878].
biodb.DEBUG[2025-04-19 16:03:08.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.583][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.584][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.585][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.592][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.593][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.597][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.608][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172878087].
biodb.DEBUG[2025-04-19 16:03:08.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.624][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.625][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.626][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.627][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.627][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.634][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.635][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.637][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.638][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.639][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.649][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-04-19 16:03:08.650][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:08.651][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:08.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:08.665][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:08.668][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:08.669][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-04-19 16:03:08.670][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:08.671][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-04-19 16:03:08.672][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:08.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.688][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.689][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.690][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.690][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.691][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.692][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.693][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.695][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.696][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.698][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.699][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.703][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:08.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.729][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.730][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.731][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.731][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.732][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.733][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.738][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.739][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.739][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.740][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.741][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.742][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.752][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172905633].
biodb.DEBUG[2025-04-19 16:03:08.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:08.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.767][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.768][private$selectFields]
biodb.TRACE[2025-04-19 16:03:08.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:08.769][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:08.770][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.771][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.771][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.776][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.777][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:08.778][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.779][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.781][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:08.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:08.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.792][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172898073].
biodb.DEBUG[2025-04-19 16:03:08.798][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:08.799][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:08.817][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:08.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:08.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.820][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.826][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:08.826][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:08.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.829][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.831][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:08.832][biodb::testThat]
biodb.INFO [2025-04-19 16:03:08.833][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-04-19 16:03:08.834][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:08.834][biodb::testThat]
biodb.TRACE[2025-04-19 16:03:08.837][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:08.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:08.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.840][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:08.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:08.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:08.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:08.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:08.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:08.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:08.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:08.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:08.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:08.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:08.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:08.883][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:08.885][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:08.886][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:08.887][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:08.943][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:08.944][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:08.945][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:08.946][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:09.017][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:09.019][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2025-04-19 16:03:09.022][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2025-04-19 16:03:09.024][private$loadEntries] Creating entries from ids [2]: "146034288, 172914379".
biodb.DEBUG[2025-04-19 16:03:09.025][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:03:09.026][cch$loadFileContent] Trying to load 2 files from cache: [2]: "146034288, 172914379".
biodb.TRACE[2025-04-19 16:03:09.027][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-04-19 16:03:09.028][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:09.028][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:09.029][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:09.030][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:09.031][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-04-19 16:03:09.031][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-04-19 16:03:09.033][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/146034288,172914379/XML".
biodb.DEBUG[2025-04-19 16:03:09.035][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:09.036][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:09.036][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/146034288,172914379/XML".
biodb.TRACE[2025-04-19 16:03:09.144][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/146034288,172914379/XML).
biodb.TRACE[2025-04-19 16:03:09.291][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/146034288.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172914379.xml"
biodb.DEBUG[2025-04-19 16:03:09.293][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:09.294][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-04-19 16:03:09.294][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:09.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:09.305][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.306][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.312][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.313][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.318][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.319][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.324][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.325][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.331][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.331][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.337][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.338][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.343][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:09.344][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.346][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:09.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.349][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:09.350][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:09.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:09.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:09.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.355][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:09.356][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:09.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:09.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:09.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.361][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.362][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.367][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:09.368][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:09.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.370][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:09.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:09.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.373][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:09.374][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:09.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:09.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:09.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.379][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:09.380][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:09.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:09.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:09.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.385][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:09.386][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:09.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:09.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:09.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.392][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:09.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.400][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:09.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.409][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:09.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.418][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:09.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.427][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:09.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:09.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:09.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:09.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:09.481][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.482][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.487][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.488][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.494][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.495][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.500][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.501][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.506][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.507][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.513][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.513][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.519][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:09.520][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.522][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:09.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:09.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.525][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:09.526][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:09.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:09.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:09.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:09.532][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:09.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:09.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:09.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:09.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.545][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:09.545][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:09.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.547][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.548][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:09.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:09.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.551][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:09.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:09.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.553][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.554][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:09.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:09.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.557][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:09.557][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:09.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:09.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.563][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:09.564][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:09.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:09.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:09.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.569][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:09.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:09.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.578][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:09.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:09.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.587][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:09.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:09.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.596][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:09.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:09.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.604][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:09.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:09.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:09.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:09.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:09.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:09.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:09.654][self$createEntryFromContent] Accession numbers: 146034288, 172914379.
biodb.DEBUG[2025-04-19 16:03:09.654][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:09.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:09.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.670][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.671][private$selectFields]
biodb.TRACE[2025-04-19 16:03:09.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:09.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:09.673][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.679][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.680][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.681][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.681][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.683][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.683][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:09.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [146034288].
biodb.DEBUG[2025-04-19 16:03:09.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:09.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.715][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.716][private$selectFields]
biodb.TRACE[2025-04-19 16:03:09.716][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:09.717][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:09.718][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.721][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.724][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.725][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.729][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:09.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914379].
biodb.DEBUG[2025-04-19 16:03:09.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:09.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.754][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.755][private$selectFields]
biodb.TRACE[2025-04-19 16:03:09.756][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:09.756][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:09.757][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.758][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.761][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.762][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.764][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.765][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:09.765][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.768][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.768][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:09.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:09.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:09.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914375].
biodb.DEBUG[2025-04-19 16:03:09.779][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:09.779][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:09.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:09.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:09.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:09.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:09.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:09.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:09.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:09.794][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:09.796][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:09.797][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:09.798][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:09.866][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:09.867][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:09.868][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:09.869][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:09.937][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:09.939][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2025-04-19 16:03:09.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2025-04-19 16:03:09.943][private$loadEntries] Creating entries from ids [2]: "172908112, 172899159".
biodb.DEBUG[2025-04-19 16:03:09.944][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:03:09.945][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172908112, 172899159".
biodb.TRACE[2025-04-19 16:03:09.946][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-04-19 16:03:09.947][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:09.947][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:09.948][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:09.949][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:09.950][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-04-19 16:03:09.950][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-04-19 16:03:09.952][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172908112,172899159/XML".
biodb.DEBUG[2025-04-19 16:03:09.953][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:09.954][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:09.955][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172908112,172899159/XML".
biodb.TRACE[2025-04-19 16:03:10.120][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172908112,172899159/XML).
biodb.TRACE[2025-04-19 16:03:10.249][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172908112.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172899159.xml"
biodb.DEBUG[2025-04-19 16:03:10.251][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:10.252][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-04-19 16:03:10.253][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:10.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.264][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.270][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.271][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.277][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.277][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.279][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.283][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.283][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.285][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.289][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.290][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.291][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.295][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.296][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.301][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:10.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.304][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:10.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.307][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:10.308][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:10.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:10.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:10.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:10.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:10.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:10.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:10.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.325][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:10.326][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:10.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.328][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:10.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:10.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:10.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:10.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.335][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:10.335][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:10.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:10.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:10.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.341][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:10.341][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:10.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:10.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:10.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.347][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:10.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:10.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.364][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:10.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.373][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:10.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.391][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:10.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:10.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:10.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:10.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.434][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.440][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.441][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.446][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.447][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.452][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.453][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.458][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.459][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.464][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.465][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.470][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:10.471][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.472][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.473][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:10.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:10.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.476][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:10.477][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:10.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.478][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:10.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:10.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:10.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:10.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:10.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:10.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:10.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.494][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:10.495][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:10.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.497][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:10.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:10.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.500][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:10.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:10.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:10.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:10.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.506][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:10.507][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:10.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:10.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:10.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.512][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:10.513][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:10.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:10.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:10.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.518][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:10.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:10.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.527][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:10.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:10.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.535][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:10.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:10.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.544][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:10.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:10.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.554][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:10.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:10.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:10.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:10.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:10.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:10.603][self$createEntryFromContent] Accession numbers: 172908112, 172899159.
biodb.DEBUG[2025-04-19 16:03:10.604][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:10.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.621][private$selectFields]
biodb.TRACE[2025-04-19 16:03:10.622][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:10.623][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:10.623][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.625][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.627][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.630][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.636][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.637][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.641][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:10.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908112].
biodb.DEBUG[2025-04-19 16:03:10.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.666][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.667][private$selectFields]
biodb.TRACE[2025-04-19 16:03:10.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:10.668][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:10.669][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.670][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.671][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.676][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.677][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.680][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:10.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:10.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.705][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.706][private$selectFields]
biodb.TRACE[2025-04-19 16:03:10.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:10.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:10.708][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.711][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.712][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.712][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.714][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.715][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.715][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.719][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:10.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.729][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172899159].
biodb.DEBUG[2025-04-19 16:03:10.730][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:10.731][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:10.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:10.761][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:10.764][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:10.765][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-04-19 16:03:10.766][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:10.767][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-04-19 16:03:10.768][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:10.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.784][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.785][private$selectFields]
biodb.TRACE[2025-04-19 16:03:10.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:10.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:10.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.788][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.793][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.794][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.795][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.797][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:10.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914375].
biodb.DEBUG[2025-04-19 16:03:10.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.809][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.814][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.822][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.823][private$selectFields]
biodb.TRACE[2025-04-19 16:03:10.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:10.824][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:10.825][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.826][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.827][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.832][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.833][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.836][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:10.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.846][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172899831].
biodb.DEBUG[2025-04-19 16:03:10.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.862][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.863][private$selectFields]
biodb.TRACE[2025-04-19 16:03:10.863][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:10.864][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:10.865][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.866][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.869][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.873][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.876][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:10.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172859178].
biodb.DEBUG[2025-04-19 16:03:10.887][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:10.888][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:10.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:10.908][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:10.910][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:10.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-04-19 16:03:10.912][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:10.913][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-04-19 16:03:10.914][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:10.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.929][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.930][private$selectFields]
biodb.TRACE[2025-04-19 16:03:10.931][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:10.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:10.932][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.934][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.935][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.938][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.939][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.939][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.940][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.941][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.943][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:10.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.953][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:10.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:10.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:10.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:10.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.970][private$selectFields]
biodb.TRACE[2025-04-19 16:03:10.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:10.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:10.972][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.978][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.979][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:10.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.982][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.982][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:10.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:10.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:10.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:10.992][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172886345].
biodb.DEBUG[2025-04-19 16:03:10.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:10.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:10.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:10.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:10.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:11.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:11.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:11.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.008][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.009][private$selectFields]
biodb.TRACE[2025-04-19 16:03:11.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:11.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:11.011][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.015][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.018][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.018][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.019][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.020][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.022][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:11.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.031][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862279].
biodb.DEBUG[2025-04-19 16:03:11.032][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:11.033][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:11.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:11.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:11.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:11.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:11.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:11.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:11.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:11.064][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:11.066][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:11.067][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:11.068][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:11.124][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:11.125][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:11.127][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:11.128][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:11.197][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:11.199][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2025-04-19 16:03:11.202][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2025-04-19 16:03:11.204][private$loadEntries] Creating entries from ids [1]: "172898106".
biodb.DEBUG[2025-04-19 16:03:11.205][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:11.206][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172898106".
biodb.TRACE[2025-04-19 16:03:11.207][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-04-19 16:03:11.207][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:11.208][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:11.209][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:11.210][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:11.210][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-04-19 16:03:11.211][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-04-19 16:03:11.212][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172898106/XML".
biodb.DEBUG[2025-04-19 16:03:11.214][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:11.215][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:11.216][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172898106/XML".
biodb.TRACE[2025-04-19 16:03:11.295][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172898106/XML).
biodb.TRACE[2025-04-19 16:03:11.503][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172898106.xml"
biodb.DEBUG[2025-04-19 16:03:11.504][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:11.505][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:11.506][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:11.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:11.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:11.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:11.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:11.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:11.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:11.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:11.517][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.523][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:11.524][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:11.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:11.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:11.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.530][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:11.531][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:11.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:11.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:11.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.536][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:11.537][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:11.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:11.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:11.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.542][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:11.543][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:11.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:11.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:11.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.549][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:11.549][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:11.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:11.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:11.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.555][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:11.555][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.557][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.558][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:11.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:11.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.561][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:11.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:11.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:11.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:11.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.582][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:11.583][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:11.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:11.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:11.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:11.590][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:11.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:11.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:11.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.595][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:11.596][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:11.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.598][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:11.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:11.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.601][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:11.602][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:11.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:11.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.607][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:11.608][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:11.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.609][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:11.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:11.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.613][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:11.614][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:11.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:11.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:11.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.619][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:11.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:11.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:11.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:11.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:11.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:11.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.628][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:11.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:11.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:11.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:11.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:11.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:11.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.637][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:11.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:11.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:11.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:11.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:11.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:11.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.645][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:11.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:11.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:11.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:11.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:11.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:11.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.654][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:11.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:11.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:11.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:11.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:11.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:11.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:11.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:11.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:11.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:11.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:11.694][self$createEntryFromContent] Accession numbers: 172898106.
biodb.DEBUG[2025-04-19 16:03:11.695][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:11.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:11.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:11.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:11.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:11.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:11.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:11.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:11.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.711][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.712][private$selectFields]
biodb.TRACE[2025-04-19 16:03:11.712][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:11.713][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:11.714][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.721][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.722][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.724][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.725][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:11.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914375].
biodb.DEBUG[2025-04-19 16:03:11.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:11.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:11.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:11.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:11.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:11.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:11.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:11.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.750][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.750][private$selectFields]
biodb.TRACE[2025-04-19 16:03:11.751][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:11.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:11.752][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.753][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.756][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.759][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.759][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.760][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.761][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.762][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.763][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:11.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.773][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172899831].
biodb.DEBUG[2025-04-19 16:03:11.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:11.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:11.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:11.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:11.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:11.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:11.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:11.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.788][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.789][private$selectFields]
biodb.TRACE[2025-04-19 16:03:11.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:11.790][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:11.791][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.792][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.795][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.796][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.799][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:11.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.802][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:11.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:11.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:11.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:11.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172898106].
biodb.DEBUG[2025-04-19 16:03:11.812][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:11.813][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:11.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:11.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:11.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:11.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:11.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:11.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:11.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:11.827][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:11.835][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:11.836][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:11.838][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:11.896][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:11.897][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:11.898][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:11.899][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:11.968][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:11.970][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2025-04-19 16:03:11.973][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2025-04-19 16:03:11.975][private$loadEntries] Creating entries from ids [3]: "172915135, 172914388, 172914268".
biodb.DEBUG[2025-04-19 16:03:11.976][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-04-19 16:03:11.977][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172915135, 172914388, 172914268".
biodb.TRACE[2025-04-19 16:03:11.978][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-04-19 16:03:11.978][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:11.979][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:11.980][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:11.981][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:11.981][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-04-19 16:03:11.982][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-04-19 16:03:11.984][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172915135,172914388,172914268/XML".
biodb.DEBUG[2025-04-19 16:03:11.985][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:11.986][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:11.987][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172915135,172914388,172914268/XML".
biodb.TRACE[2025-04-19 16:03:12.108][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172915135,172914388,172914268/XML).
biodb.TRACE[2025-04-19 16:03:12.330][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172915135.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172914388.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172914268.xml"
biodb.DEBUG[2025-04-19 16:03:12.332][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:12.333][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-04-19 16:03:12.334][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:12.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:12.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:12.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:12.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:12.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:12.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:12.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:12.347][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.348][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.353][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.354][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.355][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.360][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.360][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.366][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.367][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.372][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.373][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.378][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.379][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.385][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:12.386][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.388][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:12.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.391][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:12.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:12.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:12.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:12.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:12.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:12.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:12.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.403][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.404][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.410][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:12.410][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:12.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.412][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.413][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:12.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:12.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.416][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:12.416][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:12.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:12.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:12.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.422][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.423][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.428][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.429][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.434][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:12.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.443][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:12.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.452][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:12.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:12.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.471][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:12.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:12.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:12.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:12.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:12.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:12.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:12.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:12.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:12.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:12.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:12.514][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.515][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.521][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.522][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.527][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.528][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.533][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.534][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.540][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.541][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.546][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.547][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.553][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:12.554][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.556][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:12.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.569][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:12.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:12.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:12.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:12.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:12.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:12.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:12.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:12.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.591][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:12.592][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:12.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.593][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.594][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:12.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:12.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.596][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:12.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:12.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.601][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.602][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.603][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.608][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.608][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.614][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:12.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.624][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:12.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.633][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:12.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.643][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:12.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.652][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:12.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:12.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:12.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:12.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:12.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:12.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:12.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:12.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:12.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:12.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:12.697][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.704][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.704][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.710][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.711][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.717][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.717][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.723][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.723][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.729][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.730][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.735][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:12.736][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.739][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:12.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.742][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:12.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:12.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.744][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:12.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:12.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.748][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:12.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:12.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.750][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:12.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:12.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:12.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.761][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:12.762][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:12.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.764][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:12.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.768][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:12.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:12.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:12.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:12.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.774][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.775][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:12.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.780][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.781][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:12.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.787][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:12.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:12.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.796][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:12.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:12.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.806][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:12.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:12.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.815][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:12.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:12.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.824][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:12.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:12.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:12.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:12.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:12.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:12.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:12.894][self$createEntryFromContent] Accession numbers: 172915135, 172914388, 172914268.
biodb.DEBUG[2025-04-19 16:03:12.895][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:12.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:12.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:12.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:12.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:12.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:12.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:12.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:12.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.911][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:12.912][private$selectFields]
biodb.TRACE[2025-04-19 16:03:12.912][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:12.913][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:12.914][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:12.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.916][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.918][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.921][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:12.922][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:12.922][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.923][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.926][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:12.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.937][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172915135].
biodb.DEBUG[2025-04-19 16:03:12.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:12.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:12.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:12.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:12.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:12.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:12.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:12.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.953][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:12.954][private$selectFields]
biodb.TRACE[2025-04-19 16:03:12.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:12.955][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:12.956][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:12.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.959][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.962][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.963][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:12.964][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:12.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.968][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:12.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.978][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914388].
biodb.DEBUG[2025-04-19 16:03:12.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:12.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:12.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:12.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:12.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:12.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:12.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:12.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:12.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:12.994][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:12.995][private$selectFields]
biodb.TRACE[2025-04-19 16:03:12.996][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:12.997][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:12.997][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:12.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:12.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.001][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.002][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.005][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.009][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.020][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914268].
biodb.DEBUG[2025-04-19 16:03:13.021][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:13.021][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:13.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:13.053][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:13.056][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:13.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2025-04-19 16:03:13.058][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:13.059][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2025-04-19 16:03:13.061][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:13.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.077][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.078][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.080][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.088][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.091][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [146034288].
biodb.DEBUG[2025-04-19 16:03:13.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.124][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.124][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.133][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.134][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.136][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.138][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914379].
biodb.DEBUG[2025-04-19 16:03:13.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.164][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.166][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.169][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.170][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.172][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.173][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.176][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914375].
biodb.DEBUG[2025-04-19 16:03:13.187][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:13.188][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:13.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:13.202][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:13.205][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:13.206][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2025-04-19 16:03:13.207][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:13.208][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2025-04-19 16:03:13.209][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:13.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.225][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.226][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.226][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.227][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.234][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.235][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.238][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.248][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908112].
biodb.DEBUG[2025-04-19 16:03:13.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.264][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.264][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.265][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.266][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.266][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.267][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.270][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.273][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.273][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.274][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.275][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.276][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.278][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.287][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:13.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.303][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.304][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.304][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.305][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.306][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.306][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.307][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.309][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.310][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.313][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.313][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.315][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.316][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.317][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.327][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172899159].
biodb.DEBUG[2025-04-19 16:03:13.328][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:13.329][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:13.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:13.359][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:13.361][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:13.362][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-04-19 16:03:13.363][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:13.364][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-04-19 16:03:13.365][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:13.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.388][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.389][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.390][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.390][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.391][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.398][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.401][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.402][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914375].
biodb.DEBUG[2025-04-19 16:03:13.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.428][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.437][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.440][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.441][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172899831].
biodb.DEBUG[2025-04-19 16:03:13.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.466][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.466][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.468][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.469][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.470][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.476][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.477][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.479][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.480][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.490][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172859178].
biodb.DEBUG[2025-04-19 16:03:13.490][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:13.491][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:13.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:13.505][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:13.508][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:13.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-04-19 16:03:13.510][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:13.511][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-04-19 16:03:13.512][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:13.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.528][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.528][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.531][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.534][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.535][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.538][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.541][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.541][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:13.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.567][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.570][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.575][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.576][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.577][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.578][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.580][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172886345].
biodb.DEBUG[2025-04-19 16:03:13.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.605][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.606][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.608][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.613][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.614][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.615][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.616][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.619][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.628][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172862279].
biodb.DEBUG[2025-04-19 16:03:13.629][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:13.629][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:13.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:13.668][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:13.670][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:13.671][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2025-04-19 16:03:13.672][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:13.673][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2025-04-19 16:03:13.675][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:13.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.691][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.691][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.692][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.693][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.694][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.697][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.698][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.700][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.701][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.705][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.715][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914375].
biodb.DEBUG[2025-04-19 16:03:13.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.731][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.731][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.732][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.733][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.733][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.734][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.735][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.739][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.740][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.740][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.742][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.744][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172899831].
biodb.DEBUG[2025-04-19 16:03:13.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.769][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.770][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.771][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.773][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.779][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.780][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.783][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.793][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172898106].
biodb.DEBUG[2025-04-19 16:03:13.794][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:13.794][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:13.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:13.809][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:13.812][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:13.813][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2025-04-19 16:03:13.814][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:13.815][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2025-04-19 16:03:13.817][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:13.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.833][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.833][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.834][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.835][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.835][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.836][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.837][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.839][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.840][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.841][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.842][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.842][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.843][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.844][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.846][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.856][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172915135].
biodb.DEBUG[2025-04-19 16:03:13.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.873][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.874][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.875][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.876][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.877][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.882][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.883][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.887][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.898][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914388].
biodb.DEBUG[2025-04-19 16:03:13.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.921][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.922][private$selectFields]
biodb.TRACE[2025-04-19 16:03:13.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:13.923][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:13.924][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.925][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.926][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.928][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.929][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.931][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.932][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:13.932][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.933][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.935][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:13.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:13.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914268].
biodb.DEBUG[2025-04-19 16:03:13.946][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:13.947][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:13.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:13.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:13.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:13.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:13.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:13.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:13.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:13.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:13.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:13.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:14.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:14.005][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:14.006][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:14.007][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:14.063][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:14.063][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:14.065][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:14.066][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:14.135][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:14.137][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2025-04-19 16:03:14.140][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2025-04-19 16:03:14.141][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:14.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:14.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:14.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:14.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:14.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:14.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:14.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:14.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.158][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.159][private$selectFields]
biodb.TRACE[2025-04-19 16:03:14.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:14.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:14.161][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.164][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.164][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.165][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.167][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.168][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.169][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.170][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.171][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.172][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:14.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.182][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [146034288].
biodb.DEBUG[2025-04-19 16:03:14.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:14.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:14.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:14.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:14.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:14.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:14.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:14.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.198][private$selectFields]
biodb.TRACE[2025-04-19 16:03:14.199][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:14.199][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:14.200][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.201][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.202][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.207][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.207][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.208][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.209][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.211][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:14.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.221][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914379].
biodb.DEBUG[2025-04-19 16:03:14.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:14.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:14.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:14.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:14.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:14.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:14.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:14.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.237][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.238][private$selectFields]
biodb.TRACE[2025-04-19 16:03:14.239][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:14.240][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:14.240][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.241][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.245][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.247][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.248][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:14.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.252][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:14.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914375].
biodb.DEBUG[2025-04-19 16:03:14.263][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:14.264][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:14.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:14.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:14.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:14.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:14.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:14.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:14.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:14.279][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:14.281][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:14.282][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:14.283][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:14.340][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:14.341][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:14.342][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:14.344][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:14.421][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:14.423][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2025-04-19 16:03:14.426][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2025-04-19 16:03:14.428][private$loadEntries] Creating entries from ids [2]: "172914377, 172913537".
biodb.DEBUG[2025-04-19 16:03:14.429][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-04-19 16:03:14.430][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172914377, 172913537".
biodb.TRACE[2025-04-19 16:03:14.431][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-04-19 16:03:14.440][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-04-19 16:03:14.441][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:14.442][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:14.443][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-04-19 16:03:14.444][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-04-19 16:03:14.445][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-04-19 16:03:14.447][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172914377,172913537/XML".
biodb.DEBUG[2025-04-19 16:03:14.449][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:14.449][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:14.451][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172914377,172913537/XML".
biodb.TRACE[2025-04-19 16:03:14.569][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172914377,172913537/XML).
biodb.TRACE[2025-04-19 16:03:14.764][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172914377.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172913537.xml"
biodb.DEBUG[2025-04-19 16:03:14.766][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-04-19 16:03:14.767][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-04-19 16:03:14.768][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-04-19 16:03:14.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:14.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:14.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:14.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:14.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:14.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:14.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:14.781][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.788][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.788][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.790][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.794][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.795][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.801][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.802][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.808][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.808][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.814][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.815][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.821][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:14.822][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.824][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:14.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.828][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:14.828][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:14.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:14.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:14.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:14.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:14.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:14.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:14.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.841][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:14.842][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:14.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:14.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:14.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.847][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:14.848][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:14.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.850][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.851][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:14.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.854][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:14.855][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:14.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.856][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:14.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:14.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.860][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:14.861][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:14.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:14.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.867][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:14.868][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:14.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:14.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:14.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.873][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:14.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.883][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:14.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.892][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:14.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.901][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:14.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.911][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:14.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:14.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:14.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:14.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:14.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:14.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:14.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:14.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:14.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:14.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:14.955][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:14.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.962][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.962][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:14.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.968][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.969][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:14.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.975][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.976][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.977][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:14.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.981][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.982][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.983][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:14.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.988][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.988][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.994][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:14.995][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:14.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-04-19 16:03:14.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:14.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.001][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:15.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:15.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:15.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:15.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:15.008][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:15.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.009][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:15.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:15.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.013][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.014][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.024][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:15.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.029][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:15.031][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:15.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.033][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:15.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:15.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.036][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:15.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:15.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-04-19 16:03:15.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:15.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.042][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:15.043][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:15.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:15.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:15.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.048][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:15.049][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:15.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:15.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:15.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.054][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-04-19 16:03:15.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:15.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:15.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:15.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:15.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:15.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.063][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-04-19 16:03:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:15.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:15.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:15.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:15.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:15.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.072][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-04-19 16:03:15.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:15.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:15.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:15.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:15.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.081][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-04-19 16:03:15.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:15.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:15.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:15.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:15.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.090][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-04-19 16:03:15.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:15.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:15.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:15.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:15.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:15.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:15.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:15.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:15.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:15.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:15.142][self$createEntryFromContent] Accession numbers: 172914377, 172913537.
biodb.DEBUG[2025-04-19 16:03:15.143][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:15.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.160][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.160][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.161][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.162][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.164][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.167][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.169][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.170][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.171][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.172][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.173][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.174][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.184][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914377].
biodb.DEBUG[2025-04-19 16:03:15.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.200][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.201][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.202][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.203][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.210][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.211][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.211][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.214][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.214][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.225][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172913537].
biodb.DEBUG[2025-04-19 16:03:15.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.240][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.241][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.242][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.243][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.245][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.247][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.247][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.250][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.250][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.251][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.252][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.254][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908112].
biodb.DEBUG[2025-04-19 16:03:15.265][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:15.266][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:15.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:15.305][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:15.307][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:15.308][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-04-19 16:03:15.309][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:15.310][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-04-19 16:03:15.311][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:15.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.328][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.329][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.330][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.331][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.333][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.338][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.339][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.343][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.353][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172890878].
biodb.DEBUG[2025-04-19 16:03:15.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.370][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.371][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.371][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.373][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.374][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.375][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.377][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.380][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.381][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.384][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.395][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172878087].
biodb.DEBUG[2025-04-19 16:03:15.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.411][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.412][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.413][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.420][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.422][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.423][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.423][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.426][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.437][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-04-19 16:03:15.437][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:15.438][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:15.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:15.453][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:15.456][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:15.457][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-04-19 16:03:15.458][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:15.459][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-04-19 16:03:15.460][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:15.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.476][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.477][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.478][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.479][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.480][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.481][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.482][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.483][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.485][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.486][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.486][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.487][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.488][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.490][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.500][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:15.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.517][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.517][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.519][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.526][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.530][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.541][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172905633].
biodb.DEBUG[2025-04-19 16:03:15.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.563][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.563][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.564][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.565][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.569][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.574][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.575][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.576][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.578][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.578][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.589][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172898073].
biodb.DEBUG[2025-04-19 16:03:15.589][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:15.590][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:15.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:15.622][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:15.624][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:15.625][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:15.626][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:15.681][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:15.682][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:15.683][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:15.684][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:15.762][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:15.764][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2025-04-19 16:03:15.768][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2025-04-19 16:03:15.769][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:15.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.788][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.788][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.793][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.796][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.797][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.798][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.798][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.802][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172898106].
biodb.DEBUG[2025-04-19 16:03:15.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.830][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.830][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.831][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.832][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.836][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.837][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.838][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.839][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.840][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.843][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.854][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172890878].
biodb.DEBUG[2025-04-19 16:03:15.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:15.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.871][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.871][private$selectFields]
biodb.TRACE[2025-04-19 16:03:15.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:15.873][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:15.874][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.874][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.878][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.878][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.882][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:15.882][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.883][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.886][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:15.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:15.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:15.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:15.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172878087].
biodb.DEBUG[2025-04-19 16:03:15.897][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:15.898][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:15.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:15.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:15.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:15.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:15.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:15.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:15.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:15.913][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:15.915][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-04-19 16:03:15.916][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-04-19 16:03:15.918][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-04-19 16:03:15.974][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-04-19 16:03:15.975][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-04-19 16:03:15.976][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-04-19 16:03:15.977][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-04-19 16:03:16.048][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-04-19 16:03:16.050][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2025-04-19 16:03:16.052][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2025-04-19 16:03:16.054][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:16.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.071][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.072][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.073][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.075][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.078][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.081][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.082][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.086][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.105][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172915135].
biodb.DEBUG[2025-04-19 16:03:16.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.122][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.123][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.123][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.124][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.125][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.126][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.127][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.130][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.132][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.132][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.133][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.134][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.136][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914388].
biodb.DEBUG[2025-04-19 16:03:16.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.164][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.166][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.170][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.170][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.172][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.173][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.175][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.176][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.177][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914268].
biodb.DEBUG[2025-04-19 16:03:16.188][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:16.189][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:16.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:16.221][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:16.224][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:16.225][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2025-04-19 16:03:16.226][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:16.227][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2025-04-19 16:03:16.229][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:16.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.245][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.246][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.248][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.252][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.252][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.253][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.256][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.257][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.261][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [146034288].
biodb.DEBUG[2025-04-19 16:03:16.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.288][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.289][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.290][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.291][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.295][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.296][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.299][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.303][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.303][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.315][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914379].
biodb.DEBUG[2025-04-19 16:03:16.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.331][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.332][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.333][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.334][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.335][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.339][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.342][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.343][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.346][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.347][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.358][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914375].
biodb.DEBUG[2025-04-19 16:03:16.359][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:16.360][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:16.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:16.375][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:16.383][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:16.385][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2025-04-19 16:03:16.386][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:16.388][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2025-04-19 16:03:16.389][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:16.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.407][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.408][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.409][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.410][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.411][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.412][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.412][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.418][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.419][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.420][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.421][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.423][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914377].
biodb.DEBUG[2025-04-19 16:03:16.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.451][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.452][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.452][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.453][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.454][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.455][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.455][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.457][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.458][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.460][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.461][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.462][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.463][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.464][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.466][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.477][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172913537].
biodb.DEBUG[2025-04-19 16:03:16.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.493][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.494][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.495][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.497][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.497][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.498][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.501][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.502][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.504][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.505][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.505][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.509][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908112].
biodb.DEBUG[2025-04-19 16:03:16.520][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:16.521][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:16.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:16.553][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:16.556][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:16.557][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-04-19 16:03:16.558][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:16.559][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-04-19 16:03:16.560][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:16.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.576][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.577][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.578][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.579][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.583][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.584][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.587][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.590][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.591][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.601][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172890878].
biodb.DEBUG[2025-04-19 16:03:16.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.616][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.617][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.619][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.620][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.621][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.623][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.627][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.631][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.641][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172878087].
biodb.DEBUG[2025-04-19 16:03:16.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.659][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.666][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.667][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.668][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.669][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.672][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.673][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.675][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.676][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.679][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.689][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [159708966].
biodb.DEBUG[2025-04-19 16:03:16.690][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:16.691][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:16.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:16.706][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:16.708][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:16.709][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-04-19 16:03:16.710][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:16.711][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-04-19 16:03:16.712][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:16.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.730][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.732][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.736][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.737][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.738][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.739][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.740][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.741][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.744][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172908038].
biodb.DEBUG[2025-04-19 16:03:16.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.770][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.771][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.772][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.773][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.777][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.780][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.781][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.784][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.794][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172905633].
biodb.DEBUG[2025-04-19 16:03:16.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.811][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.811][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.812][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.813][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.817][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.820][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.820][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.821][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.822][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.824][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.834][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172898073].
biodb.DEBUG[2025-04-19 16:03:16.835][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:16.836][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:16.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:16.866][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:16.868][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:16.869][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2025-04-19 16:03:16.870][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:16.871][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2025-04-19 16:03:16.872][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:16.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.888][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.889][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.891][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.891][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.895][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.898][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.898][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.903][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172898106].
biodb.DEBUG[2025-04-19 16:03:16.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.929][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.935][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.936][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.937][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.946][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.947][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.948][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.950][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.951][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.962][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172890878].
biodb.DEBUG[2025-04-19 16:03:16.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:16.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:16.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:16.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:16.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:16.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:16.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:16.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.979][private$selectFields]
biodb.TRACE[2025-04-19 16:03:16.980][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:16.981][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:16.981][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.982][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.985][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.986][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.988][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.989][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:16.989][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.990][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.992][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.992][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:16.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:16.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:16.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172878087].
biodb.DEBUG[2025-04-19 16:03:17.002][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:17.003][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:17.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:17.018][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:17.020][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:17.021][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2025-04-19 16:03:17.022][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:17.024][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2025-04-19 16:03:17.025][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:17.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.041][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.042][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.043][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.044][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.044][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.045][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.046][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.048][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.049][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.051][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.052][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.052][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.055][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:17.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.066][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172915135].
biodb.DEBUG[2025-04-19 16:03:17.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.082][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.083][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.083][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.084][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.088][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.089][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.092][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.092][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.096][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914388].
biodb.DEBUG[2025-04-19 16:03:17.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.121][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.122][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.123][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.123][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.124][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.125][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.126][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.128][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.131][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.132][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-04-19 16:03:17.133][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.133][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.136][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-04-19 16:03:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.145][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172914268].
biodb.DEBUG[2025-04-19 16:03:17.146][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:17.147][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:17.163][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:17.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:17.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.166][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:17.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:17.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:17.172][biodb::testThat]
biodb.INFO [2025-04-19 16:03:17.173][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-04-19 16:03:17.174][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:17.174][biodb::testThat]
biodb.TRACE[2025-04-19 16:03:17.177][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:17.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:17.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.180][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-04-19 16:03:17.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-04-19 16:03:17.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:17.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:17.229][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:17.231][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:17.232][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-04-19 16:03:17.233][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:17.234][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-04-19 16:03:17.236][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:17.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.298][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.301][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.339][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:17.340][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.340][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.342][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:17.343][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.346][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.347][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.349][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.350][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.351][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.352][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.352][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.355][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.356][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.358][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.359][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.361][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.364][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.365][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.367][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.370][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.371][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.373][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.374][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.376][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.377][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.379][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.380][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.382][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.383][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.385][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.386][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.388][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.389][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.390][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.391][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.394][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.395][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.397][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.398][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.400][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.401][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.403][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.404][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.406][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.407][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.409][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.412][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.415][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.416][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.418][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.418][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.419][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.422][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.425][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.426][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.428][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.434][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.435][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.437][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.438][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.439][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.440][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:17.441][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:17.442][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.442][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.445][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.445][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.448][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.449][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.451][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.452][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.460][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.461][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.463][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.464][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.465][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.470][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.471][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.472][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.473][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.474][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.475][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.477][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.478][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.480][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.487][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.487][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.490][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.491][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.493][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.494][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.496][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.497][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.500][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:17.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.584][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.588][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172914375, [(Z)-1-carbamoyl-2-phenyl-vinyl] thiocyanate, thiocyanic acid [(Z)-3-amino-3-oxo-1-phenylprop-1-en-2-yl] ester, [(Z)-3-amino-3-oxo-1-phenylprop-1-en-2-yl] thiocyanate, [(Z)-3-azanyl-3-oxidanylidene-1-phenyl-prop-1-en-2-yl] thiocyanate, ...].
biodb.DEBUG[2025-04-19 16:03:17.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:17.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:17.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:17.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:17.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:17.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:17.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:17.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.728][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.731][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.771][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:17.772][private$selectFields]
biodb.TRACE[2025-04-19 16:03:17.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:17.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:17.774][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:17.775][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.778][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.779][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.781][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.781][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.783][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.784][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.786][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.787][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.789][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.790][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.792][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.795][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.796][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.798][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.801][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.802][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.804][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.807][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.808][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.810][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.811][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.813][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.814][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.815][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.816][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.817][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.818][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.819][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.820][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.821][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.822][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.824][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.825][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.826][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.828][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.829][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.831][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.832][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.834][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.835][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.836][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.837][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.838][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.840][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.849][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.850][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.852][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.853][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.862][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.863][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.865][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.866][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.868][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.868][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.871][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:17.871][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:17.872][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.875][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.875][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.876][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.878][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.878][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.879][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.881][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.882][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.884][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.885][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.887][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.888][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.890][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.896][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.897][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:17.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.900][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:17.901][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:17.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.903][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:17.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.906][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.907][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:17.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.909][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:17.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:17.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:17.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.915][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.916][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:17.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.918][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.919][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:17.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.921][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:17.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:17.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:17.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:17.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:17.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:17.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:17.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:17.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:17.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:17.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:17.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:17.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.013][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.019][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.083][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172899831, 1-(7-methylpyrrolo[2,3-d]pyrimidin-4-yl)azetidin-3-ol, 1-(7-methyl-4-pyrrolo[2,3-d]pyrimidinyl)-3-azetidinol, 1-(7-methylpyrrolo[2,3-d]pyrimidin-4-yl)azetidin-3-ol, 1-(7-methylpyrrolo[2,3-d]pyrimidin-4-yl)azetidin-3-ol, ...].
biodb.DEBUG[2025-04-19 16:03:18.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:18.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:18.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:18.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:18.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:18.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:18.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:18.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.130][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.145][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.149][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.189][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:18.189][private$selectFields]
biodb.TRACE[2025-04-19 16:03:18.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:18.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:18.191][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:18.192][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.193][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.195][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.196][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.198][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.199][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.200][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.201][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.202][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.204][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.204][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.207][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.207][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.209][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.210][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.213][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.215][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.224][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.225][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.228][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.231][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.234][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.238][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.240][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.241][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.242][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.243][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.244][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.245][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.246][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.247][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.249][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.250][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.251][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.253][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.254][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.255][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.256][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.257][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.258][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.260][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.261][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.263][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.264][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.267][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.270][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.273][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.276][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.277][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.279][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.285][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.291][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.292][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.294][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.294][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.295][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.297][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.298][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:18.299][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:18.299][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.300][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.302][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.303][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.305][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.306][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.307][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.308][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.309][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.311][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.311][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.312][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.314][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.314][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.315][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.317][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.327][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.327][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.330][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.332][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.333][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.335][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.336][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.339][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.339][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.342][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.342][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.345][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.346][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.348][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:18.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.437][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.440][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172859178, 1-(3-fluoro-N-methyl-anilino)cyclobutanecarbonitrile, 1-(3-fluoro-N-methylanilino)-1-cyclobutanecarbonitrile, 1-(3-fluoro-N-methylanilino)cyclobutane-1-carbonitrile, 1-[(3-fluorophenyl)-methyl-amino]cyclobutane-1-carbonitrile, ...].
biodb.DEBUG[2025-04-19 16:03:18.595][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:18.596][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:18.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:18.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:18.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:18.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:18.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:18.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:18.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:18.612][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:18.614][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:18.615][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-04-19 16:03:18.616][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:18.617][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-04-19 16:03:18.618][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:18.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:18.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:18.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:18.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:18.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:18.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:18.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:18.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.685][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.688][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.730][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:18.730][private$selectFields]
biodb.TRACE[2025-04-19 16:03:18.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:18.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:18.733][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:18.734][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.736][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.737][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.738][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.741][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.742][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.744][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.745][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.747][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.748][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.750][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.751][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.753][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.759][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.760][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.762][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.763][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.765][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.766][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.771][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.771][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.772][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.775][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.776][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.778][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.779][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.781][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.782][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.784][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.785][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.787][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.788][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.789][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.790][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.790][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.792][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.792][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.793][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.795][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.795][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.796][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.798][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.799][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.801][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.802][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.804][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.805][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.807][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.808][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.810][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.811][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.813][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.814][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.826][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.829][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.832][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.833][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.834][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.835][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.836][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.837][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.839][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:18.840][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:18.841][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.844][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.845][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.847][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.848][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.850][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.851][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.853][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.853][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.856][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.857][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.859][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.861][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.862][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.863][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.864][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.865][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.866][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.867][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.868][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.869][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.870][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.871][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.877][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.880][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:18.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.883][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.883][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:18.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.885][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.886][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:18.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.887][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.888][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:18.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:18.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:18.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:18.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:18.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:18.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:18.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:18.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:18.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:18.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:18.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:18.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:18.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.969][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.972][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.975][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:18.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:18.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:18.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:18.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:18.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:18.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:18.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:18.999][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.037][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172908038, ethyl 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylate, 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylic acid ethyl ester, ethyl 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylate, ethyl 3-methyl-5-nitro-6-oxidanylidene-1H-pyridine-2-carboxylate, ...].
biodb.DEBUG[2025-04-19 16:03:19.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:19.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:19.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:19.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:19.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:19.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:19.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:19.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.110][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:19.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:19.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.113][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:19.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:19.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.153][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:19.154][private$selectFields]
biodb.TRACE[2025-04-19 16:03:19.155][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:19.155][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:19.156][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:19.157][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.159][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.160][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.161][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.162][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.163][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.164][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.167][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.168][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.170][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.171][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.173][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.174][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.176][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.179][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.182][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.184][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:19.185][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:19.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.186][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.187][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.188][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.189][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.192][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.193][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.194][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.199][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.199][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.202][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.202][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.204][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.207][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.208][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.210][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.211][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.213][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.214][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.216][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.217][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.219][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.220][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.222][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.222][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.225][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.225][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.226][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.228][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.231][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:19.232][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:19.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.234][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.237][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.238][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.240][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.243][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.245][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.246][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.248][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.249][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.251][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:19.252][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:19.253][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.253][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.255][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.255][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.256][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.258][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.258][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.259][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.261][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.262][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.264][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.265][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.267][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.268][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.270][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.271][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.273][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.273][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.278][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.284][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.290][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.290][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.293][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.293][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.296][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:19.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.448][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172886345, 2-(6-methyl-5-oxo-1H-[1,2,4]triazolo[4,3-a]pyrimidin-3-yl)acetic acid;hydrate, 2-(6-methyl-5-oxo-1H-[1,2,4]triazolo[4,3-a]pyrimidin-3-yl)acetic acid;hydrate, 2-(6-methyl-5-oxo-1H-[1,2,4]triazolo[4,3-a]pyrimidin-3-yl)acetic acid;hydrate, 2-(6-methyl-5-oxidanylidene-1H-[1,2,4]triazolo[4,3-a]pyrimidin-3-yl)ethanoic acid;hydrate, ...].
biodb.DEBUG[2025-04-19 16:03:19.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:19.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:19.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:19.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:19.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:19.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:19.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:19.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.513][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:19.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:19.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.516][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:19.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:19.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.555][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:19.556][private$selectFields]
biodb.TRACE[2025-04-19 16:03:19.557][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:19.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:19.558][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:19.559][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.562][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.562][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.564][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.565][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.567][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.568][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.570][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.571][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.573][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.574][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.581][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.582][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.586][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.591][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:19.592][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:19.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.594][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.597][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.600][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.603][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.604][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.606][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.607][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.609][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.610][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.612][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.614][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.615][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.615][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.617][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.617][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.618][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.620][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.620][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.621][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.622][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.623][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.624][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.625][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.626][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.627][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.628][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.629][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.630][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.633][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.636][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.638][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:19.639][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:19.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.640][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.641][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.643][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.647][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.648][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.653][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.654][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.656][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.657][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.659][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:19.659][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:19.660][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.661][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.662][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.663][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.664][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.665][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.666][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.667][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.668][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.669][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.670][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.671][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.672][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.672][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.674][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.674][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.675][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.677][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.677][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.684][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.686][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.688][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.689][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.692][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.692][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.697][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.698][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.699][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.700][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.701][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.702][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.703][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:19.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.854][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172862279, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-tris(fluoranyl)ethanoic acid, ...].
biodb.DEBUG[2025-04-19 16:03:19.855][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:19.856][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:19.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:19.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:19.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:19.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:19.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:19.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:19.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:19.876][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:19.878][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:19.879][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-04-19 16:03:19.880][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:19.881][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-04-19 16:03:19.883][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:19.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:19.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:19.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:19.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:19.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:19.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:19.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:19.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:19.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:19.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:19.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:19.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:19.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:19.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:19.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:19.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:19.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:19.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.947][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:19.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:19.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.950][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:19.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:19.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:19.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:19.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:19.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:19.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:19.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:19.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.990][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:19.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:19.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.993][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:19.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:19.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:19.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:19.996][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:19.996][private$selectFields]
biodb.TRACE[2025-04-19 16:03:19.997][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:19.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:19.998][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:19.999][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.001][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.002][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.003][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.004][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.005][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.006][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.007][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.008][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.008][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.011][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.011][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.013][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.013][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.014][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.016][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.016][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.017][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.019][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.020][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.021][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.025][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.025][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.026][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.028][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.028][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.029][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.031][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.034][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.034][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.037][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.038][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.040][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.040][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.041][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.043][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.043][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.044][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.046][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.046][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.047][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.049][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.049][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.051][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.052][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.053][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.055][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.056][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.058][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.059][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.061][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.061][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.064][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.065][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.067][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.067][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.070][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.071][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.073][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.074][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.076][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.077][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.085][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.086][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.087][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.093][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.100][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.101][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.102][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.103][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.104][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.105][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.106][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.107][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.108][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.109][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:20.110][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:20.111][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.112][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.113][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.114][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.115][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.116][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.117][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.118][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.119][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.120][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.121][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.122][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.123][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.124][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.126][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.127][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.129][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.130][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.133][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.134][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.135][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.137][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.138][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.139][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.140][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.141][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.142][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.145][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.146][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.147][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.148][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.150][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.154][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.155][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.157][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.158][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.160][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:20.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.247][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.250][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.253][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.317][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172914375, [(Z)-1-carbamoyl-2-phenyl-vinyl] thiocyanate, thiocyanic acid [(Z)-3-amino-3-oxo-1-phenylprop-1-en-2-yl] ester, [(Z)-3-amino-3-oxo-1-phenylprop-1-en-2-yl] thiocyanate, [(Z)-3-azanyl-3-oxidanylidene-1-phenyl-prop-1-en-2-yl] thiocyanate, ...].
biodb.DEBUG[2025-04-19 16:03:20.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:20.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:20.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:20.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:20.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:20.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:20.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:20.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.388][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.391][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.436][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:20.437][private$selectFields]
biodb.TRACE[2025-04-19 16:03:20.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:20.438][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:20.439][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:20.440][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.441][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.442][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.443][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.444][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.445][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.446][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.446][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.448][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.448][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.449][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.451][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.451][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.452][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.454][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.454][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.455][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.457][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.466][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.467][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.469][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.470][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.472][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.475][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.481][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.482][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.484][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.485][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.487][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.488][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.489][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.490][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.492][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.493][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.494][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.495][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.496][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.497][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.498][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.499][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.500][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.501][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.502][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.502][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.504][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.505][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.505][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.507][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.510][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.511][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.512][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.513][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.514][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.515][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.516][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.516][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.518][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.519][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.519][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.521][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.521][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.522][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.524][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.525][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.527][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.530][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.530][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.531][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.533][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.533][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.534][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.536][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.536][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.537][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.539][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.539][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:20.540][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:20.541][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.542][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.544][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.545][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.547][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.548][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.550][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.551][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.553][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.554][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.556][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.556][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.557][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.559][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.559][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.562][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.565][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.566][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.568][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.569][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.569][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.571][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.572][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.574][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.575][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.577][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.578][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.583][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.584][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.586][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.592][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.595][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:20.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.680][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.683][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.686][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.749][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172899831, 1-(7-methylpyrrolo[2,3-d]pyrimidin-4-yl)azetidin-3-ol, 1-(7-methyl-4-pyrrolo[2,3-d]pyrimidinyl)-3-azetidinol, 1-(7-methylpyrrolo[2,3-d]pyrimidin-4-yl)azetidin-3-ol, 1-(7-methylpyrrolo[2,3-d]pyrimidin-4-yl)azetidin-3-ol, ...].
biodb.DEBUG[2025-04-19 16:03:20.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:20.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:20.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:20.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:20.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:20.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:20.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:20.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.812][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.815][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.861][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.867][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:20.868][private$selectFields]
biodb.TRACE[2025-04-19 16:03:20.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:20.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:20.870][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:20.871][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.873][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.874][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.875][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.876][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.877][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.877][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.879][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.880][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.880][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.882][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.883][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.883][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.886][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.886][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.889][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.895][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.897][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.898][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.900][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.901][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.906][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.909][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.910][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.912][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.913][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.914][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.915][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.916][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.917][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.918][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.918][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.920][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.923][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.924][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.924][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.926][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.927][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.927][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.929][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.929][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.930][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.931][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.932][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.933][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.934][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.935][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.936][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.937][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.938][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.940][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.943][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.944][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.946][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.947][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:20.948][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:20.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.949][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.950][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.951][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:20.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.952][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:20.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.955][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.956][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:20.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:20.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.958][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.959][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:20.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.961][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.962][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.963][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:20.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.964][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.965][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.966][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:20.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.967][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.968][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.969][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:20.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.970][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.971][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:20.972][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:20.973][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:20.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:20.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.976][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.977][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:20.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.979][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.980][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:20.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.982][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.983][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:20.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.985][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.986][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:20.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.988][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.989][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.989][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:20.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.991][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.992][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:20.993][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:20.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.994][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:20.996][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:20.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:20.997][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:20.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:20.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.000][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.000][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.001][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.003][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.003][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.006][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.009][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.010][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.012][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.013][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.015][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.016][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.018][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.018][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.021][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:21.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.112][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.115][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.118][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.141][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.184][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172859178, 1-(3-fluoro-N-methyl-anilino)cyclobutanecarbonitrile, 1-(3-fluoro-N-methylanilino)-1-cyclobutanecarbonitrile, 1-(3-fluoro-N-methylanilino)cyclobutane-1-carbonitrile, 1-[(3-fluorophenyl)-methyl-amino]cyclobutane-1-carbonitrile, ...].
biodb.DEBUG[2025-04-19 16:03:21.185][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:21.186][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:21.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:21.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:21.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:21.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:21.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:21.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:21.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:21.202][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:21.204][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:21.205][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-04-19 16:03:21.206][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:21.207][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-04-19 16:03:21.208][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:21.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:21.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:21.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:21.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:21.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:21.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:21.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:21.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.272][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.275][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.291][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.316][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.322][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:21.323][private$selectFields]
biodb.TRACE[2025-04-19 16:03:21.324][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:21.324][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:21.325][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:21.326][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.329][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.330][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.331][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.332][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.332][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.334][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.334][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.335][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.337][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.338][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.338][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.340][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.340][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.341][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.343][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.343][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.354][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.356][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.359][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.359][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.360][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.362][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.363][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.365][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.368][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.369][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.371][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.374][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.375][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.376][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.377][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.378][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.379][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.380][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.381][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.382][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.383][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.384][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.385][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.387][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.387][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.388][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.390][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.391][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.392][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.393][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.394][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.396][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.397][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.398][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.399][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.400][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.402][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.402][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.403][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.405][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.405][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.408][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.411][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.412][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.413][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.414][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.415][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.416][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.417][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.418][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.419][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.421][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.421][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.424][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.427][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.427][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.428][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.430][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.431][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.431][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.433][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.434][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.434][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.436][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.437][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:21.438][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:21.438][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.441][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.442][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.444][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.445][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.448][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.448][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.451][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.451][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.454][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.455][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.457][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.466][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.466][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.467][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.469][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.470][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.472][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.475][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.480][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.481][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.482][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.483][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.484][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.485][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.486][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.487][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:21.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.572][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.575][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172908038, ethyl 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylate, 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylic acid ethyl ester, ethyl 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylate, ethyl 3-methyl-5-nitro-6-oxidanylidene-1H-pyridine-2-carboxylate, ...].
biodb.DEBUG[2025-04-19 16:03:21.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:21.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:21.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:21.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:21.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:21.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:21.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:21.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.718][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.721][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.767][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:21.768][private$selectFields]
biodb.TRACE[2025-04-19 16:03:21.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:21.769][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:21.770][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:21.771][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.772][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.773][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.774][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.775][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.776][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.777][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.778][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.779][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.780][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.781][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.782][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.783][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.784][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.785][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.786][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.787][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.789][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.790][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.793][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.796][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.798][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.799][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.801][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.801][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.802][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.804][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.806][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.807][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.808][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.810][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.811][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.813][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.814][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.814][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.816][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.817][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.818][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.820][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.821][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.823][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.824][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.826][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.827][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.829][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.830][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.832][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.833][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.835][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.836][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.838][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.839][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.840][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.841][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.843][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.846][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.849][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.850][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:21.851][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:21.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.852][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.853][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.855][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.858][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.868][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.869][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.872][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.873][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.875][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.876][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.878][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.879][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:21.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.881][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.881][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:21.882][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:21.883][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.885][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.886][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.887][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.888][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.889][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.890][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.891][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.892][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.893][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.894][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.895][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.896][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.897][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.898][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.899][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.900][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.901][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.902][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.903][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.906][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.907][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.908][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:21.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.910][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.910][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.911][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:21.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.913][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:21.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.916][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.917][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:21.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:21.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.919][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.920][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:21.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.922][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.923][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.924][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:21.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.925][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.926][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.927][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:21.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.928][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.929][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:21.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:21.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:21.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:21.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:21.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:21.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:21.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:21.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:21.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:21.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:21.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:21.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172886345, 2-(6-methyl-5-oxo-1H-[1,2,4]triazolo[4,3-a]pyrimidin-3-yl)acetic acid;hydrate, 2-(6-methyl-5-oxo-1H-[1,2,4]triazolo[4,3-a]pyrimidin-3-yl)acetic acid;hydrate, 2-(6-methyl-5-oxo-1H-[1,2,4]triazolo[4,3-a]pyrimidin-3-yl)acetic acid;hydrate, 2-(6-methyl-5-oxidanylidene-1H-[1,2,4]triazolo[4,3-a]pyrimidin-3-yl)ethanoic acid;hydrate, ...].
biodb.DEBUG[2025-04-19 16:03:22.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:22.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:22.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:22.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:22.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:22.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:22.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:22.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.149][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.153][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.194][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:22.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:22.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.197][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:22.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:22.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.200][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:22.201][private$selectFields]
biodb.TRACE[2025-04-19 16:03:22.201][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:22.202][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:22.203][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:22.203][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.204][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.206][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.207][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.210][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.211][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.213][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.213][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.215][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.216][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.216][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.218][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.219][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.219][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.221][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.222][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.224][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.225][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.226][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.227][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.228][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.230][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.231][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.232][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.233][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.234][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.236][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.237][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.238][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.239][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.240][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.242][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.243][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.245][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.246][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.246][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.248][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.248][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.249][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.251][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:22.252][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:22.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.255][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.258][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.258][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.260][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.261][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.263][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.264][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.265][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.266][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.267][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.269][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.270][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.271][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.272][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.274][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.275][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.276][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.277][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.280][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.281][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.281][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.283][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.284][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.285][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.286][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.289][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.290][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.292][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.295][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.296][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.296][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.298][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.298][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.299][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.301][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.302][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:22.302][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:22.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.304][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.305][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:22.306][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:22.306][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.309][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.310][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.310][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.313][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.314][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.316][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.317][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.318][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.319][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.320][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.322][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.322][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.323][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.325][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.325][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.326][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.328][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.328][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.330][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.333][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.334][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.335][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.336][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.339][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.340][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.342][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.344][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.345][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.346][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.347][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.348][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.349][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.350][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.352][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.352][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:22.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.417][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.504][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172862279, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-trifluoroacetic acid, 2,3,3a,4,5,6-hexahydro-1H-pyrrolo[1,2-b]pyrazole;2,2,2-tris(fluoranyl)ethanoic acid, ...].
biodb.DEBUG[2025-04-19 16:03:22.505][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:22.506][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:22.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:22.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:22.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:22.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:22.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:22.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:22.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:22.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:22.549][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:22.552][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:22.553][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-04-19 16:03:22.554][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:22.555][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-04-19 16:03:22.556][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:22.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:22.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:22.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:22.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:22.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:22.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:22.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:22.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.620][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.624][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.671][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:22.671][private$selectFields]
biodb.TRACE[2025-04-19 16:03:22.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:22.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:22.673][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:22.674][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.676][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.677][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.678][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.679][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.680][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.681][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.682][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.683][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.684][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.685][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.686][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.687][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.688][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.689][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.690][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.691][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.692][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.693][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.694][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.697][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.698][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.699][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.701][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.702][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.703][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.704][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.706][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.709][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.710][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.711][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.712][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.715][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.716][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.717][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.719][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.719][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.720][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.722][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.722][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.723][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.725][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.726][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.727][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.728][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.729][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.729][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.732][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.733][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.735][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.736][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.738][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.738][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.741][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.744][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.745][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.747][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.748][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.750][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.751][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.753][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.754][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.755][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.758][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.759][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.760][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.761][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.763][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.764][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.765][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.766][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.767][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.768][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.768][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.770][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.771][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:22.771][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:22.772][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.773][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.774][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.775][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.776][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.777][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.778][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.778][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.780][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.781][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.782][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.783][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.784][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.784][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.786][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.786][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.787][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.788][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.789][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.790][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.793][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.796][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.798][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.798][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.800][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.801][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.802][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.806][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.807][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.811][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.812][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.813][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.815][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.816][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.818][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:22.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:22.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:22.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:22.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:22.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:22.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:22.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:22.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:22.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:22.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.910][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.913][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.916][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:22.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:22.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:22.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:22.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:22.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:22.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.960][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:22.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:22.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172890878, 1-benzyl-3,3a,4,5,6,6a-hexahydropyrrolo[3,4-c]isoxazole, 1-(phenylmethyl)-3,3a,4,5,6,6a-hexahydropyrrolo[3,4-c]isoxazole, 1-benzyl-3,3a,4,5,6,6a-hexahydropyrrolo[3,4-c][1,2]oxazole, 1-(phenylmethyl)-3,3a,4,5,6,6a-hexahydropyrrolo[3,4-c][1,2]oxazole, ...].
biodb.DEBUG[2025-04-19 16:03:22.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:22.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:22.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:22.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:22.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:22.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:22.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:22.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:22.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:22.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:22.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:22.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.044][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:23.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:23.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.047][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.085][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:23.086][private$selectFields]
biodb.TRACE[2025-04-19 16:03:23.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:23.087][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:23.088][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:23.089][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.091][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.092][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.093][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.094][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.095][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.095][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.097][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.098][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.098][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.100][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.100][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.101][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.103][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.104][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.106][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.107][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.109][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.110][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.111][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.112][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.114][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.115][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:23.116][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:23.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.118][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.124][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.125][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.132][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.133][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.134][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.137][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.138][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.140][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.141][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.143][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.146][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.147][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.149][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.150][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.152][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.153][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.155][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.155][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.158][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.158][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.161][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.162][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.164][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.167][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.169][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:23.170][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:23.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.173][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.179][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.181][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.182][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.183][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.184][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.185][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.186][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.188][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.189][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.190][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.191][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:23.192][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:23.193][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.195][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.196][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.197][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.198][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.199][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.200][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.202][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.202][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.204][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.205][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.205][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.207][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.208][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.208][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.210][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.211][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.213][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.214][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.217][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.218][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.219][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.220][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.223][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.224][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.226][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.227][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.228][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.229][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.230][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.231][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.232][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.233][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.234][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.235][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.236][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.237][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.238][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:23.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.392][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172878087, (2-but-3-enylphenyl)-trimethyl-silane, (2-but-3-enylphenyl)-trimethylsilane, (2-but-3-enylphenyl)-trimethylsilane, (2-but-3-enylphenyl)-trimethyl-silane, ...].
biodb.DEBUG[2025-04-19 16:03:23.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:23.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:23.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:23.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:23.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:23.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:23.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:23.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.458][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:23.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:23.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.461][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:23.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:23.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.501][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:23.502][private$selectFields]
biodb.TRACE[2025-04-19 16:03:23.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:23.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:23.504][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:23.505][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.507][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.508][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.509][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.510][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.511][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.512][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.514][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.515][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.517][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.518][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.520][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.521][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.523][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.527][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.528][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.531][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.532][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:23.533][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:23.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.534][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.535][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.536][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.537][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.538][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.539][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.540][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.541][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.543][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.545][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.547][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.548][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.549][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.550][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.551][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.552][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.553][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.556][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.557][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.559][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.560][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.561][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.562][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.563][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.564][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.565][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.566][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.567][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.568][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.569][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.570][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.571][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.574][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.575][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.580][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:23.581][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:23.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.583][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.584][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.588][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.589][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.591][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.593][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.594][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.595][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.596][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.597][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.598][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.599][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.600][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.601][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:23.602][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:23.603][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.604][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.606][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.607][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.609][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.610][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.611][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.612][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.613][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.615][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.615][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.616][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.619][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.619][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.622][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.625][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.626][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.631][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.631][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.632][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.644][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.645][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.648][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.652][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.653][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.656][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.657][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.659][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:23.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.743][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [159708966, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, ...].
biodb.DEBUG[2025-04-19 16:03:23.808][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:23.809][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:23.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:23.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:23.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:23.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:23.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:23.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:23.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:23.824][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:23.826][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:23.827][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-04-19 16:03:23.828][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:23.830][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-04-19 16:03:23.831][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:23.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:23.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:23.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:23.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:23.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:23.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:23.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:23.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.906][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:23.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:23.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.910][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:23.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:23.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:23.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.951][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:23.951][private$selectFields]
biodb.TRACE[2025-04-19 16:03:23.952][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:23.953][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:23.954][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:23.954][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:23.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:23.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.957][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.958][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.959][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:23.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.960][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.961][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.961][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:23.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.963][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.964][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.964][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:23.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.966][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.966][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.967][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:23.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.969][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.969][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.970][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:23.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.972][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.972][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:23.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:23.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.975][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.976][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:23.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:23.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.978][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:23.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.981][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.982][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:23.982][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:23.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.984][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.985][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.985][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:23.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.987][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.987][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:23.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.990][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.991][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:23.991][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:23.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.993][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:23.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.996][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:23.997][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.997][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:23.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:23.999][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.000][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.001][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.002][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.003][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.005][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.006][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.006][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.008][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.009][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.009][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.011][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.012][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.012][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.015][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.016][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.018][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.019][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.021][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.022][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.024][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.030][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.030][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.032][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.033][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.033][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.035][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.036][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.037][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.038][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.039][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.041][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.044][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.045][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.045][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.047][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.048][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.049][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.050][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.051][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:24.051][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:24.052][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.054][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.055][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.056][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.057][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.058][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.059][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.060][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.061][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.062][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.063][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.064][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.065][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.066][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.067][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.068][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.069][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.070][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.072][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.075][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.075][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.078][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.079][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.079][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.081][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.082][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.083][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.084][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.085][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.087][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.088][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.088][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.090][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.093][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.094][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.095][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.096][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.097][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.098][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.099][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.100][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:24.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.170][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.192][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.196][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.198][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172908038, ethyl 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylate, 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylic acid ethyl ester, ethyl 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylate, ethyl 3-methyl-5-nitro-6-oxidanylidene-1H-pyridine-2-carboxylate, ...].
biodb.DEBUG[2025-04-19 16:03:24.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:24.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:24.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:24.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:24.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:24.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:24.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:24.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.328][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.331][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.370][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:24.371][private$selectFields]
biodb.TRACE[2025-04-19 16:03:24.372][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:24.372][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:24.373][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:24.374][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.376][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.377][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.378][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.379][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.380][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.381][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.382][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.383][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.384][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.385][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.386][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.387][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.388][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.389][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.389][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.391][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.392][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.394][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.395][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.396][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.397][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.398][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.398][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.400][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.400][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.401][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.403][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.404][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.404][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.413][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.415][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.416][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.417][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.419][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.420][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.421][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.422][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.423][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.424][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.425][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.426][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.427][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.428][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.429][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.430][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.431][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.432][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.433][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.434][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.435][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.436][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.438][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.438][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.439][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.441][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.441][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.442][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.443][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.444][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.445][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.447][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.456][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.457][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.459][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.460][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.461][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.462][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.463][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.464][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.465][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.466][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.468][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.469][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.470][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.472][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.473][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.475][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.476][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.478][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:24.478][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:24.479][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.482][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.483][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.485][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.486][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.488][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.489][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.491][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.491][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.494][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.495][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.496][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.497][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.499][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.500][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.501][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.502][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.503][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.504][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.505][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.506][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.507][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.508][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.509][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.510][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.511][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.512][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.514][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.515][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.517][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.520][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.521][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.522][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.523][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.524][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.525][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.526][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.527][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:24.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.612][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.615][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.618][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172905633, 5-chloro-3-fluoro-2-(4-methylene-1-piperidyl)pyridine, 5-chloro-3-fluoro-2-(4-methylene-1-piperidinyl)pyridine, 5-chloro-3-fluoro-2-(4-methylidenepiperidin-1-yl)pyridine, 5-chloranyl-3-fluoranyl-2-(4-methylidenepiperidin-1-yl)pyridine, ...].
biodb.DEBUG[2025-04-19 16:03:24.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:24.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:24.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:24.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:24.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:24.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:24.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.757][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.760][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.799][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:24.800][private$selectFields]
biodb.TRACE[2025-04-19 16:03:24.800][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:24.801][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:24.802][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:24.803][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.806][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.806][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.808][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.808][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.809][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.810][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.811][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.812][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.814][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.815][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.817][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.818][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.819][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.820][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.822][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.825][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.826][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.828][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.829][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.829][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.831][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.832][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.833][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.834][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.835][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.837][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.837][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.838][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.839][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.842][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.843][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.844][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.845][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.846][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.846][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.848][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.849][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.851][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.852][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.853][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.854][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.855][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.855][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.857][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.858][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.858][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.860][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.860][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.861][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.863][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.863][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.864][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.866][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.866][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.867][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.869][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.871][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.874][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.875][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:24.876][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:24.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.877][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.878][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.880][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.881][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.883][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.884][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.886][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.887][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.888][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.889][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.890][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.890][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.892][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.892][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.893][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.895][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.895][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:24.896][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:24.897][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.899][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.900][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.901][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.902][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.903][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.903][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.905][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.905][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.906][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.908][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.908][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.909][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.911][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.917][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.918][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.920][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.921][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:24.922][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:24.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.924][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.925][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:24.926][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:24.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.927][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:24.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.930][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.931][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:24.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.933][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.934][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.935][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:24.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.936][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.937][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:24.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:24.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.939][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.940][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.941][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:24.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.942][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.943][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.944][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:24.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.945][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.946][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.947][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:24.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.948][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.949][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:24.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:24.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:24.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:24.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:24.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:24.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:24.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:24.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:24.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:24.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.008][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172898073, cyclopropyl-imino-morpholino-oxo-lambda6-sulfane;hydrochloride, cyclopropyl-imino-(4-morpholinyl)-oxo-lambda6-sulfane;hydrochloride, cyclopropyl-imino-morpholin-4-yl-oxo-lambda6-sulfane;hydrochloride, azanylidene-cyclopropyl-morpholin-4-yl-oxidanylidene-lambda6-sulfane;hydrochloride, ...].
biodb.DEBUG[2025-04-19 16:03:25.096][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:25.096][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:25.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:25.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:25.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:25.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:25.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:25.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:25.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:25.116][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:25.119][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:25.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-04-19 16:03:25.121][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:25.122][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-04-19 16:03:25.123][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:25.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:25.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:25.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:25.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:25.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:25.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:25.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:25.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.197][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.200][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.240][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.242][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.246][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:25.246][private$selectFields]
biodb.TRACE[2025-04-19 16:03:25.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:25.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:25.249][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:25.249][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.251][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.252][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.253][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.255][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.256][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.258][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.259][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.261][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.262][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.264][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.265][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.266][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.267][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.268][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.269][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.270][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.271][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.272][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.273][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.275][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.276][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.277][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.278][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.279][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.281][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.284][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.285][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.287][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.290][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.291][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.292][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.293][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.294][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.295][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.296][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.297][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.298][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.300][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.300][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.302][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.303][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.304][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.305][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.306][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.307][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.308][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.309][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.310][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.312][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.312][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.313][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.315][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.315][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.316][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.317][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.318][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.320][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.321][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.322][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.323][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.326][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.327][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.328][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.329][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.330][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.332][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.333][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.335][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.336][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.338][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.339][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.339][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.341][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.341][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.342][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.344][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.344][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.345][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.347][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.347][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.348][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.349][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.350][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:25.351][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:25.352][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.354][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.355][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.356][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.357][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.358][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.359][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.360][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.361][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.362][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.363][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.364][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.365][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.366][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.367][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.368][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.369][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.370][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.372][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.375][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.378][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.378][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.379][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.381][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.381][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.384][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.384][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.386][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.387][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.389][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.393][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.394][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.394][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.396][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.397][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.397][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.399][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.400][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:25.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.494][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.497][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.500][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172890878, 1-benzyl-3,3a,4,5,6,6a-hexahydropyrrolo[3,4-c]isoxazole, 1-(phenylmethyl)-3,3a,4,5,6,6a-hexahydropyrrolo[3,4-c]isoxazole, 1-benzyl-3,3a,4,5,6,6a-hexahydropyrrolo[3,4-c][1,2]oxazole, 1-(phenylmethyl)-3,3a,4,5,6,6a-hexahydropyrrolo[3,4-c][1,2]oxazole, ...].
biodb.DEBUG[2025-04-19 16:03:25.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:25.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:25.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:25.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:25.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:25.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:25.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.614][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.629][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.632][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.670][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.682][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:25.683][private$selectFields]
biodb.TRACE[2025-04-19 16:03:25.684][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:25.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:25.686][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:25.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.689][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.690][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.691][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.693][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.693][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.694][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.696][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.697][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.698][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.699][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.700][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.701][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.702][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.703][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.705][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.711][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.712][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.714][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.715][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.717][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.717][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.720][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.720][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.721][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.723][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.723][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.724][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.726][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.729][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.729][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.730][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.731][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.732][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.733][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.734][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.735][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.736][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.737][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.738][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.740][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.741][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.742][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.743][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.744][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.745][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.746][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.747][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.747][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.749][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.749][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.750][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.752][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.752][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.753][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.754][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.755][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.756][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.757][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.758][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.760][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.763][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.764][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:25.765][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:25.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.766][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.767][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.769][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.772][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.773][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.775][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.775][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.776][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.778][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.778][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.779][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.781][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.781][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.782][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.784][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.784][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.785][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:25.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.787][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.787][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:25.788][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:25.789][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.791][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.792][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.792][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.794][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.795][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.796][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.797][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.798][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.798][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.800][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.800][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.801][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.803][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.803][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.804][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.805][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.806][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.809][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.809][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.810][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.812][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.812][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.813][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.814][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.815][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.816][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.817][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.820][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.821][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.823][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.827][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.827][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.828][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.830][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.830][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.831][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.833][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.834][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:25.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:25.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:25.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:25.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:25.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:25.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:25.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:25.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.893][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:25.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:25.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:25.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:25.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:25.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:25.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.952][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:25.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:25.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:25.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:25.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:25.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:25.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172878087, (2-but-3-enylphenyl)-trimethyl-silane, (2-but-3-enylphenyl)-trimethylsilane, (2-but-3-enylphenyl)-trimethylsilane, (2-but-3-enylphenyl)-trimethyl-silane, ...].
biodb.DEBUG[2025-04-19 16:03:25.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:25.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:25.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:25.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:25.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:25.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:25.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:26.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.055][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.101][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.104][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:26.104][private$selectFields]
biodb.TRACE[2025-04-19 16:03:26.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:26.106][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:26.107][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:26.107][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.110][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.111][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.113][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.114][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.115][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.116][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.117][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.118][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.119][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.120][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.121][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.122][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.123][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.124][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.125][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.127][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.130][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.133][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.134][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.135][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.136][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.137][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.139][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.140][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.141][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.142][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.143][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.144][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.145][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.149][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.150][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.151][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.152][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.153][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.154][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.155][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.156][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.157][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.158][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.160][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.161][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.162][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.163][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.164][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.165][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.166][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.167][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.168][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.169][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.170][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.171][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.172][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.173][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.173][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.175][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.176][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.178][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.187][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.188][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.189][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.191][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.192][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.193][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.194][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.195][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.196][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.197][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.198][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.199][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.201][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.201][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.202][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.203][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.206][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.207][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.208][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.209][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.210][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.211][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.212][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.213][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.214][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.216][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.216][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:26.217][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:26.218][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.219][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.220][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.221][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.222][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.223][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.224][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.225][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.226][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.227][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.228][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.229][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.230][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.231][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.232][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.233][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.234][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.235][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.236][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.238][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.241][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.242][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.243][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.244][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.245][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.246][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.247][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.248][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.250][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.251][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.252][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.254][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.254][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.255][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.257][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.257][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.258][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.260][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.260][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.261][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.263][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.264][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.325][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [159708966, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, potassium;benzene;2,2-dimethylbutane;hydride, ...].
biodb.DEBUG[2025-04-19 16:03:26.410][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:26.411][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-04-19 16:03:26.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:26.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:26.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:26.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:26.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:26.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:26.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:26.427][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-04-19 16:03:26.430][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-04-19 16:03:26.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-04-19 16:03:26.432][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:26.433][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-04-19 16:03:26.440][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-04-19 16:03:26.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:26.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:26.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:26.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:26.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:26.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:26.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:26.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.508][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.511][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.551][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.554][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.557][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:26.558][private$selectFields]
biodb.TRACE[2025-04-19 16:03:26.558][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:26.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:26.560][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:26.561][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.564][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.564][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.567][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.567][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.569][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.570][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.572][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.572][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.573][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.574][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.575][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.576][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.577][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.578][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.580][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.583][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.587][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.588][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.590][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.590][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.592][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.593][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.596][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.598][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.599][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.601][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.601][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.602][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.604][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.604][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.605][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.607][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.607][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.608][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.610][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.610][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.611][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.612][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.613][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.614][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.616][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.616][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.617][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.618][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.619][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.620][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.621][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.622][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.623][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.624][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.625][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.626][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.628][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.629][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.630][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.633][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.637][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.637][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.638][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.639][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.640][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.642][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.646][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.646][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.647][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.649][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.652][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.652][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.653][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.655][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.656][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.657][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.658][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.659][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.660][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.661][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.662][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:26.663][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:26.664][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.666][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.667][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.668][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.669][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.670][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.671][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.672][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.673][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.674][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.675][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.676][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.677][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.678][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.679][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.680][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.681][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.682][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.684][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.685][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.686][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.687][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.688][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.694][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.696][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.697][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.698][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.700][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.701][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.704][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.705][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.705][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.707][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.708][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.708][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.710][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.711][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.713][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.713][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.714][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.716][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.716][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.717][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.718][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.720][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:26.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.805][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.808][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.811][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172908038, ethyl 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylate, 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylic acid ethyl ester, ethyl 3-methyl-5-nitro-6-oxo-1H-pyridine-2-carboxylate, ethyl 3-methyl-5-nitro-6-oxidanylidene-1H-pyridine-2-carboxylate, ...].
biodb.DEBUG[2025-04-19 16:03:26.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:26.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:26.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:26.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:26.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:26.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:26.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:26.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:26.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:26.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:26.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:26.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:26.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:26.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:26.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:26.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:26.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.944][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.954][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:26.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:26.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:26.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:26.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.974][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:26.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:26.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:26.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:26.997][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:26.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.004][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:27.005][private$selectFields]
biodb.TRACE[2025-04-19 16:03:27.005][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:27.006][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:27.007][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:27.008][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.009][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.010][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.011][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.012][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.014][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.014][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.015][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.017][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.018][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.018][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.020][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.021][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.022][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.023][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.024][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.025][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.026][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.027][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.029][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.030][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.031][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.033][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.033][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.034][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.036][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.036][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:27.037][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:27.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.039][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.040][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.040][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.042][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.045][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.046][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.048][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.049][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.050][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.052][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.052][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.054][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.055][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.056][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.057][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.058][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.059][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.060][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.062][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.062][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.065][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.065][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.066][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.068][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.068][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.069][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.071][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.072][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.072][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.074][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.075][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.075][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.077][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.077][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.078][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.080][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.080][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.083][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.084][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.086][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.086][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.089][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.089][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:27.090][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:27.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.092][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.092][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.095][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.098][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.098][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.101][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.102][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.103][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.104][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.105][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.106][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.107][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.108][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.109][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.110][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.111][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.112][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.113][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:27.114][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:27.114][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.117][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.117][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.118][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.120][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.121][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.121][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.123][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.123][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.124][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.126][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.126][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.127][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.128][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.129][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.130][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.131][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.132][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.134][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.135][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.136][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.137][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.138][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.140][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.141][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:27.141][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:27.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.143][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.144][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.146][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.146][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.147][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.148][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.149][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.152][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.155][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.155][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.156][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.158][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.159][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.159][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.161][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.162][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.252][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:27.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:27.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.255][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:27.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:27.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:27.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:27.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172905633, 5-chloro-3-fluoro-2-(4-methylene-1-piperidyl)pyridine, 5-chloro-3-fluoro-2-(4-methylene-1-piperidinyl)pyridine, 5-chloro-3-fluoro-2-(4-methylidenepiperidin-1-yl)pyridine, 5-chloranyl-3-fluoranyl-2-(4-methylidenepiperidin-1-yl)pyridine, ...].
biodb.DEBUG[2025-04-19 16:03:27.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:27.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:27.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:27.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:27.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:27.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:27.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.388][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:27.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:27.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.391][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:27.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:27.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.434][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.437][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:27.438][private$selectFields]
biodb.TRACE[2025-04-19 16:03:27.439][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-04-19 16:03:27.440][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-04-19 16:03:27.440][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-04-19 16:03:27.441][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.442][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.444][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.444][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.445][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.447][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.448][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.448][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.450][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.451][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.451][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.453][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.454][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.455][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.456][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.464][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.465][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.467][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.471][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.474][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.477][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.478][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:27.479][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:27.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.481][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.482][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.484][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.487][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.488][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.490][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.491][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.492][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.493][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.494][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.495][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.497][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.497][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.498][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.500][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.501][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.501][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.503][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.504][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.506][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.507][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.508][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.509][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.510][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.511][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.513][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.513][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.514][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.516][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.517][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.517][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.519][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.520][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.521][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.522][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.523][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.525][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.527][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.529][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.532][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.533][ef$get] Asked field names are: logp.
biodb.TRACE[2025-04-19 16:03:27.534][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-04-19 16:03:27.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.535][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.536][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.538][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.542][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.542][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.543][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.545][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.548][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.549][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.550][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.551][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.552][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.553][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.555][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.555][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.556][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-04-19 16:03:27.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.558][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.559][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:27.560][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2025-04-19 16:03:27.560][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.563][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.564][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.565][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.566][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.567][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.568][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.569][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.570][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.571][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.573][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.574][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.574][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.576][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.577][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.578][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.579][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.580][ef$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.582][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.583][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.584][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.586][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.586][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.589][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.590][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.590][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.592][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.595][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.596][ef$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.598][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.600][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.602][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.603][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.603][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.605][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.606][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.607][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.608][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.609][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-04-19 16:03:27.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:27.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:27.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-04-19 16:03:27.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-04-19 16:03:27.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-04-19 16:03:27.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-04-19 16:03:27.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-04-19 16:03:27.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-04-19 16:03:27.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-04-19 16:03:27.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-04-19 16:03:27.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-04-19 16:03:27.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-04-19 16:03:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-04-19 16:03:27.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-04-19 16:03:27.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-04-19 16:03:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-04-19 16:03:27.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:27.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-04-19 16:03:27.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-04-19 16:03:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.772][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172898073, cyclopropyl-imino-morpholino-oxo-lambda6-sulfane;hydrochloride, cyclopropyl-imino-(4-morpholinyl)-oxo-lambda6-sulfane;hydrochloride, cyclopropyl-imino-morpholin-4-yl-oxo-lambda6-sulfane;hydrochloride, azanylidene-cyclopropyl-morpholin-4-yl-oxidanylidene-lambda6-sulfane;hydrochloride, ...].
biodb.DEBUG[2025-04-19 16:03:27.773][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-04-19 16:03:27.774][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-04-19 16:03:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:27.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:27.782][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:27.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-04-19 16:03:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:27.789][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-19 16:03:27.790][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2025-04-19 16:03:27.791][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2025-04-19 16:03:27.792][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-19 16:03:27.792][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:27.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:27.794][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:27.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:27.795][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-04-19 16:03:27.799][biodb::testContext]
biodb.INFO [2025-04-19 16:03:27.800][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:03:27.801][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2025-04-19 16:03:27.801][biodb::testContext] ********************************************************************************
biodb.INFO [2025-04-19 16:03:27.802][biodb::testContext]
biodb.INFO [2025-04-19 16:03:27.804][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:03:27.805][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-04-19 16:03:27.809][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:03:27.810][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-04-19 16:03:27.810][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-04-19 16:03:27.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.813][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-04-19 16:03:27.814][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-04-19 16:03:27.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.817][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-04-19 16:03:27.818][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-04-19 16:03:27.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.821][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-04-19 16:03:27.822][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-04-19 16:03:27.823][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-04-19 16:03:27.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.826][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-04-19 16:03:27.826][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-04-19 16:03:27.827][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-04-19 16:03:27.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.830][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-04-19 16:03:27.831][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-04-19 16:03:27.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.834][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-04-19 16:03:27.835][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-04-19 16:03:27.836][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-04-19 16:03:27.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.839][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-04-19 16:03:27.839][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-04-19 16:03:27.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.842][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-04-19 16:03:27.843][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-04-19 16:03:27.844][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-04-19 16:03:27.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.847][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:03:27.848][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-04-19 16:03:27.848][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-04-19 16:03:27.849][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-04-19 16:03:27.850][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-04-19 16:03:27.851][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-04-19 16:03:27.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.853][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-04-19 16:03:27.854][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-04-19 16:03:27.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.857][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-04-19 16:03:27.858][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-04-19 16:03:27.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.861][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-04-19 16:03:27.862][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-04-19 16:03:27.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.865][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-04-19 16:03:27.865][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-04-19 16:03:27.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.869][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-04-19 16:03:27.870][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-04-19 16:03:27.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.872][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-04-19 16:03:27.873][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-04-19 16:03:27.890][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-04-19 16:03:27.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.893][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-04-19 16:03:27.894][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-04-19 16:03:27.895][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-04-19 16:03:27.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.898][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-04-19 16:03:27.899][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.900][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-04-19 16:03:27.901][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.902][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:03:27.902][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.903][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.904][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.905][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.906][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:03:27.906][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:03:27.907][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.908][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-04-19 16:03:27.909][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:03:27.909][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.910][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.911][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:03:27.911][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:03:27.911][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:03:27.911][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:03:27.911][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:03:27.912][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:03:27.912][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:27.913][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:27.914][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:03:27.915][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:27.915][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:27.916][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.917][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.917][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:03:27.918][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:03:27.919][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.920][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.920][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-04-19 16:03:27.922][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.923][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:03:27.923][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.924][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:03:27.925][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.926][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.926][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.927][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.928][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:03:27.929][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:03:27.929][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.930][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-04-19 16:03:27.931][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:03:27.932][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.932][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.933][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:03:27.933][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:03:27.933][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:03:27.933][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-04-19 16:03:27.933][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-04-19 16:03:27.934][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:03:27.935][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:27.935][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:27.936][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:03:27.937][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:27.937][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:27.938][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.939][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.940][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:03:27.940][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:03:27.941][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.942][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.943][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-04-19 16:03:27.944][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.945][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-04-19 16:03:27.946][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.946][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:03:27.947][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.948][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.949][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.950][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.951][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-04-19 16:03:27.951][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:03:27.952][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.953][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-04-19 16:03:27.954][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:03:27.955][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.955][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.956][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.957][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:03:27.958][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:27.958][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:27.959][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:03:27.960][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:27.961][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:27.962][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.962][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.963][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:03:27.964][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:03:27.965][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.966][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.966][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-04-19 16:03:27.968][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.968][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-04-19 16:03:27.969][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.970][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:03:27.971][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.972][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.972][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.973][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.974][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-04-19 16:03:27.975][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:03:27.976][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.977][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-04-19 16:03:27.977][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:03:27.978][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.979][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:27.980][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.980][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-04-19 16:03:27.981][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:27.982][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:27.983][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:03:27.984][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:27.984][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:27.985][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:03:27.986][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.986][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:03:27.987][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:03:27.988][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:27.989][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:27.990][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:03:27.990][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:27.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:27.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:27.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:27.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:27.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:27.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:27.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.059][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-04-19 16:03:28.060][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-04-19 16:03:28.061][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-04-19 16:03:28.062][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-04-19 16:03:28.063][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-04-19 16:03:28.064][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-04-19 16:03:28.065][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-04-19 16:03:28.066][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-04-19 16:03:28.067][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-04-19 16:03:28.069][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-04-19 16:03:28.070][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-04-19 16:03:28.071][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-04-19 16:03:28.072][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-04-19 16:03:28.073][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-04-19 16:03:28.074][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:03:28.075][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:03:28.076][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-04-19 16:03:28.077][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-04-19 16:03:28.078][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-04-19 16:03:28.079][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-04-19 16:03:28.080][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-04-19 16:03:28.081][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-04-19 16:03:28.082][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-04-19 16:03:28.083][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-04-19 16:03:28.085][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-04-19 16:03:28.086][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-04-19 16:03:28.087][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-04-19 16:03:28.088][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-04-19 16:03:28.089][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-04-19 16:03:28.090][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-04-19 16:03:28.091][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-04-19 16:03:28.092][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-04-19 16:03:28.093][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-04-19 16:03:28.094][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-04-19 16:03:28.095][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-04-19 16:03:28.096][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-04-19 16:03:28.097][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-04-19 16:03:28.098][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-04-19 16:03:28.099][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-04-19 16:03:28.100][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-04-19 16:03:28.101][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-04-19 16:03:28.102][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-04-19 16:03:28.103][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-04-19 16:03:28.104][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-04-19 16:03:28.106][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-04-19 16:03:28.107][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:03:28.108][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-04-19 16:03:28.109][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-04-19 16:03:28.110][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-04-19 16:03:28.111][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-04-19 16:03:28.112][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-04-19 16:03:28.113][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-04-19 16:03:28.114][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-04-19 16:03:28.115][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-04-19 16:03:28.116][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-04-19 16:03:28.117][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-04-19 16:03:28.118][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-04-19 16:03:28.119][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-04-19 16:03:28.120][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-04-19 16:03:28.121][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-04-19 16:03:28.122][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-04-19 16:03:28.124][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-04-19 16:03:28.125][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-04-19 16:03:28.126][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-04-19 16:03:28.126][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-04-19 16:03:28.127][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-04-19 16:03:28.129][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-04-19 16:03:28.130][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-04-19 16:03:28.131][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-04-19 16:03:28.132][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-04-19 16:03:28.133][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-04-19 16:03:28.134][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-04-19 16:03:28.135][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-04-19 16:03:28.136][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-04-19 16:03:28.137][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-04-19 16:03:28.138][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-04-19 16:03:28.139][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-04-19 16:03:28.140][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-04-19 16:03:28.141][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-04-19 16:03:28.142][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-04-19 16:03:28.144][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-04-19 16:03:28.145][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-04-19 16:03:28.146][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-04-19 16:03:28.147][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-04-19 16:03:28.148][initialize] This is biodb version 1.16.0.
biodb.DEBUG[2025-04-19 16:03:28.149][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-04-19 16:03:28.149][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.151][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-04-19 16:03:28.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-04-19 16:03:28.237][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-04-19 16:03:28.244][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-04-19 16:03:28.246][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.266][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-04-19 16:03:28.267][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.267][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:03:28.268][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.269][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.270][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.270][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.271][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-04-19 16:03:28.272][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:03:28.273][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.274][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-04-19 16:03:28.274][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:03:28.275][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-04-19 16:03:28.275][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-04-19 16:03:28.276][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:28.277][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:28.277][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-19 16:03:28.278][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:28.279][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:28.280][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:03:28.280][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:28.281][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:28.282][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.282][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-04-19 16:03:28.282][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-04-19 16:03:28.283][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:03:28.284][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:03:28.285][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.286][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:28.287][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-04-19 16:03:28.288][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.289][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-04-19 16:03:28.290][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.291][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:03:28.291][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.292][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.293][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.294][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.294][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:03:28.295][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:03:28.296][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.297][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-04-19 16:03:28.297][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:03:28.298][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-04-19 16:03:28.298][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-04-19 16:03:28.298][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-04-19 16:03:28.298][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-04-19 16:03:28.298][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-04-19 16:03:28.298][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-04-19 16:03:28.299][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:28.300][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:03:28.300][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-04-19 16:03:28.301][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:28.302][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:28.303][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:03:28.304][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:28.304][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:28.305][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.306][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:28.306][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:03:28.306][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:03:28.307][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:03:28.308][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.309][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:28.309][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-04-19 16:03:28.311][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:28.312][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-04-19 16:03:28.313][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.313][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:03:28.314][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.315][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.315][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.316][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.317][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:03:28.318][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:03:28.319][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.319][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-04-19 16:03:28.320][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.321][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-04-19 16:03:28.322][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:28.322][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-04-19 16:03:28.322][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-04-19 16:03:28.322][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-04-19 16:03:28.323][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-04-19 16:03:28.324][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:28.325][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:28.325][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:03:28.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:28.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:28.328][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.329][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:28.329][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:03:28.329][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-04-19 16:03:28.329][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:03:28.330][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:03:28.331][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.332][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-04-19 16:03:28.333][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-04-19 16:03:28.334][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.335][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-04-19 16:03:28.336][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.336][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-04-19 16:03:28.337][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.338][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.339][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.340][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.341][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-04-19 16:03:28.341][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-04-19 16:03:28.342][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.343][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-04-19 16:03:28.344][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-04-19 16:03:28.345][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-04-19 16:03:28.345][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-04-19 16:03:28.346][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-04-19 16:03:28.346][self$setPropertyValue]
biodb.DEBUG[2025-04-19 16:03:28.347][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-04-19 16:03:28.348][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:28.349][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:28.350][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-04-19 16:03:28.350][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-04-19 16:03:28.351][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-04-19 16:03:28.352][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-04-19 16:03:28.353][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-04-19 16:03:28.353][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-04-19 16:03:28.353][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-04-19 16:03:28.354][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-04-19 16:03:28.354][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-04-19 16:03:28.355][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-04-19 16:03:28.356][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-04-19 16:03:28.357][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-04-19 16:03:28.358][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-04-19 16:03:28.359][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-04-19 16:03:28.361][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-04-19 16:03:28.362][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-04-19 16:03:28.363][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-04-19 16:03:28.367][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2025-04-19 16:03:28.368][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2025-04-19 16:03:28.369][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2025-04-19 16:03:28.370][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-04-19 16:03:28.371][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-04-19 16:03:28.372][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-04-19 16:03:28.373][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-04-19 16:03:28.374][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-04-19 16:03:28.375][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-04-19 16:03:28.376][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-04-19 16:03:28.380][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2025-04-19 16:03:28.383][biodb::testThat]
biodb.INFO [2025-04-19 16:03:28.384][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-04-19 16:03:28.385][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:28.386][biodb::testThat]
biodb.TRACE[2025-04-19 16:03:28.388][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2025-04-19 16:03:28.389][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:28.391][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-04-19 16:03:28.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:28.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:28.403][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.406][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.410][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.411][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.413][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:28.448][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2025-04-19 16:03:28.450][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.453][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:03:28.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:03:28.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.459][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.462][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:03:28.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:03:28.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.469][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:03:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:03:28.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.546][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.569][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.571][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.582][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.585][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.592][ef$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:28.599][biodb::testThat]
biodb.INFO [2025-04-19 16:03:28.600][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-04-19 16:03:28.601][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:28.602][biodb::testThat]
biodb.DEBUG[2025-04-19 16:03:28.603][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2025-04-19 16:03:28.605][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2025-04-19 16:03:28.607][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2025-04-19 16:03:28.608][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-04-19 16:03:28.610][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2025-04-19 16:03:28.611][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2025-04-19 16:03:28.612][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-04-19 16:03:28.613][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-04-19 16:03:28.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-04-19 16:03:28.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:28.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:28.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:28.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:28.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:28.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-04-19 16:03:28.625][ef$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.627][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.632][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.634][ef$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-04-19 16:03:28.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-04-19 16:03:28.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-04-19 16:03:28.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-04-19 16:03:28.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-04-19 16:03:28.671][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2025-04-19 16:03:28.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-04-19 16:03:28.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-04-19 16:03:28.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:03:28.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-04-19 16:03:28.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:03:28.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-04-19 16:03:28.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:28.689][biodb::testThat]
biodb.INFO [2025-04-19 16:03:28.690][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-04-19 16:03:28.691][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:28.692][biodb::testThat]
biodb.INFO [2025-04-19 16:03:28.697][biodb::testThat]
biodb.INFO [2025-04-19 16:03:28.698][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-04-19 16:03:28.699][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:28.700][biodb::testThat]
biodb.WARN [2025-04-19 16:03:28.703][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-04-19 16:03:28.717][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-04-19 16:03:28.725][biodb::testThat]
biodb.INFO [2025-04-19 16:03:28.726][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-04-19 16:03:28.727][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:28.728][biodb::testThat]
biodb.TRACE[2025-04-19 16:03:28.736][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:03:28.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:03:28.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.746][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:03:28.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:03:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.756][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:03:28.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:03:28.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.760][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.764][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-04-19 16:03:28.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:03:28.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-04-19 16:03:28.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-04-19 16:03:28.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-04-19 16:03:28.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-04-19 16:03:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-04-19 16:03:28.780][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-04-19 16:03:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-04-19 16:03:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-04-19 16:03:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-04-19 16:03:28.802][biodb::testThat]
biodb.INFO [2025-04-19 16:03:28.803][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-04-19 16:03:28.803][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:28.804][biodb::testThat]
biodb.INFO [2025-04-19 16:03:28.811][biodb::testThat]
biodb.INFO [2025-04-19 16:03:28.812][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-04-19 16:03:28.813][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:28.814][biodb::testThat]
biodb.INFO [2025-04-19 16:03:28.821][biodb::testThat]
biodb.INFO [2025-04-19 16:03:28.822][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-04-19 16:03:28.823][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:28.824][biodb::testThat]
biodb.DEBUG[2025-04-19 16:03:28.827][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2025-04-19 16:03:28.925][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2025-04-19 16:03:29.023][biodb::testThat]
biodb.INFO [2025-04-19 16:03:29.024][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-04-19 16:03:29.026][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-04-19 16:03:29.027][biodb::testThat]
biodb.DEBUG[2025-04-19 16:03:29.151][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2025-04-19 16:03:29.242][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-04-19 16:03:29.243][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2025-04-19 16:03:29.244][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2025-04-19 16:03:29.245][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-04-19 16:03:29.245][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-04-19 16:03:29.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-04-19 16:03:29.247][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-04-19 16:03:29.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-04-19 16:03:29.248][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-04-19 16:03:29.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1032 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1032 ]
> 
> proc.time()
   user  system elapsed 
 34.873   1.676  68.411

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.5.0 RC (2025-04-04 r88126)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... INFO
  installed size is  8.2Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  NcbiCcdsConn.Rd: BiodbFactory, BiodbConn
  NcbiCcdsEntry.Rd: BiodbHtmlEntry
  NcbiEntrezConn.Rd: BiodbConn
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** this is package ‘biodbNcbi’ version ‘1.12.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)